Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eragrostis_20tef_20[genbank_20GCA_5F000970635.1_202015-04-08] 13,883 sequences; 607,317,615 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq1443 212 7e-50 seq3634 201 1e-46 >seq1443 Length=121453 Score = 212 bits (234), Expect = 7e-50 Identities = 454/661 (69%), Gaps = 22/661 (3%) Strand=Plus/Minus Query 59769 GATGTCCAGATTGCCGAGGCCCGGTCGTTCTACGCGTATCAG-TCGTTCAACGAGTCTAT 59827 || || ||| | |||||||| || | ||||||| | ||| ||| || |||| || Sbjct 26030 GACGTGCAGGTCGCCGAGGCGCGCGCCTTCTACGGCTTCCAGATCGC-CATCGAGAACAT 25972 Query 59828 CCACTCCGAGACGTACTCGCTCATGATCGATAAGTTGGTCAAGGATCCGGAAGAGAAGGC 59887 |||||| |||| ||||||||| || | || | || || || | ||||||| Sbjct 25971 CCACTCGGAGATGTACTCGCTGCTGCTGGAGACGTACATCCGCGACGGCGCCGAGAAGGA 25912 Query 59888 TGGTCTGTTCCGTGCCATAGAGACGTCCCCCGCAGTTAAACAAAAAGCAGAATGGGCCAT 59947 | || ||||| ||||| |||||| |||||| || | || || || |||||||| Sbjct 25911 CCGCCTCTTCCGCGCCATCGAGACGGTCCCCGCCGTCCGCCGCAAGGCCGAGTGGGCCAT 25852 Query 59948 GCAGTGGAT-GAGTCCTG-GAGCATCATTTGCACAACGTCTCATAGCTTTTGCATGCGTG 60005 || ||||| || | | |||| || || | || || | || || || ||||| Sbjct 25851 GCGCTGGATCGACGGCGGCGAGCGC--TTCGCCGAGCGCCTAGTCGCCTTCGCCTGCGTC 25794 Query 60006 GAAGGAATCTTCTTCTCTGGCTCGTTCTGTGCTATTTTCTGGCTCAAAAAGCGTGGCCTC 60065 || || ||||||||||| ||||| ||||| || || ||||||||||| ||||| |||||| Sbjct 25793 GAGGGCATCTTCTTCTCGGGCTCCTTCTGCGCCATCTTCTGGCTCAAGAAGCGCGGCCTC 25734 Query 60066 ATGCCGGGCCTGAGTTTCTCCAACGAGCTGATTTCCCGGGACGAGGGCCTCCATCAGGAG 60125 ||||||||||| | |||||||||||||| || ||||| |||||||||||||| || Sbjct 25733 ATGCCGGGCCTCACCTTCTCCAACGAGCTCATCTCCCGCGACGAGGGCCTCCACTGCGAC 25674 Query 60126 TTTGCAGTGAC-GCTCTATTCACACCT-ATTGGAAAAAT--GCCCTTCCAAGGATATTCA 60181 || || || | ||||| | ||| || || | | ||| | | | Sbjct 25673 TTCGC-CTGCCTCCTCTACGACCTCCTCCGCGGCAAGCTCGACGAGTCCCGCG---TCCG 25618 Query 60182 CAAGATTGT-TCAGTGGGCTTGTGAAGTGGAGAGCGAGTTCATCACAGAAGCGCTTCCAT 60240 | |||| || | | | | | || | ||| |||||||| || || ||||| |||| Sbjct 25617 CGAGATCGTCGCCGACGCCGT-CGACATCGAGCGCGAGTTCGTCTGCGACGCGCTCCCAT 25559 Query 60241 GCAAACTCATAGGTATGGACGCTGGAGAAATGACGCAGTACATTCAGTTTGTCGCGGACC 60300 || ||| | || ||| ||| | |||| |||||||| |||| ||||| |||| Sbjct 25558 GCGCGCTCGTCGGCATGAACGGCGTGCTCATGAGCCAGTACATCGAGTTCGTCGCCGACC 25499 Query 60301 GC---CTCATGGCCCAGTTTGGAGAAGGACCAATTTACGGCGTGAATAACCCTTTCGACT 60357 || |||||||| | | | | ||| | || ||| ||| | ||||| ||||||| Sbjct 25498 GCCTGCTCATGGCACTG-GGGCACAAGAA--GATGTACAACGTCACCAACCCATTCGACT 25442 Query 60358 GGATGGAGACCATCTCGTTGGAAGGGAAGACCAACTTCTTTGAGAAGCGGGTCGGGGATT 60417 |||||||| |||||| || | || |||||||||||||| |||||||| ||||| || | Sbjct 25441 GGATGGAGCTCATCTCCCTGCAGGGCAAGACCAACTTCTTCGAGAAGCGCGTCGGCGAGT 25382 Query 60418 A 60418 | Sbjct 25381 A 25381 >seq3634 Length=55208 Score = 201 bits (222), Expect = 1e-46 Identities = 453/663 (68%), Gaps = 26/663 (4%) Strand=Plus/Minus Query 59769 GATGTCCAGATTGCCGAGGCCCGGTCGTTCTACGCGTATCAG-TCGTTCAACGAGTCTAT 59827 || || ||| | |||||||| || | ||||||| | ||| ||| || |||| || Sbjct 898 GACGTGCAGGTCGCCGAGGCGCGCGCCTTCTACGGCTTCCAGATCGC-CATCGAGAACAT 840 Query 59828 CCACTCCGAGACGTACTCGCTCATGATCGATAAGTTGGTCAAGGATCCGGAAGAGAAGGC 59887 |||||| |||| ||||||||| || | || | || || || | ||||||| Sbjct 839 CCACTCGGAGATGTACTCGCTGCTGCTGGAGACGTACATCCGCGACGGCGCCGAGAAGGA 780 Query 59888 TGGTCTGTTCCGTGCCATAGAGACGTCCCCCGCAGTTAAACAAAAAGCAGAATGGGCCAT 59947 | || ||||| ||||| |||||| |||||| || | || || || |||||||| Sbjct 779 CCGCCTCTTCCGCGCCATCGAGACGGTCCCCGCCGTCCGCCGCAAGGCCGAGTGGGCCAT 720 Query 59948 GCAGTGGAT-GAGTCCTG-GAGCATCATTTGCACAACGTCTCATAGCTTTTGCATGCGTG 60005 || ||||| || | | |||| || || | || || | || || || ||||| Sbjct 719 GCGCTGGATCGACGGCGGCGAGCGC--TTCGCCGAGCGCCTAGTCGCCTTCGCCTGCGTC 662 Query 60006 GAAGGAATCTTCTTCTCTGGCTCGTTCTGTGCTATTTTCTGGCTCAAAAAGCGTGGCCTC 60065 || || ||||||||||| ||||| ||||| || || ||||||||||| ||||| |||||| Sbjct 661 GAGGGCATCTTCTTCTCGGGCTCCTTCTGCGCCATCTTCTGGCTCAAGAAGCGCGGCCTC 602 Query 60066 ATGCCGGGCCTGAGTTTCTCCAACGAGCTGATTTCCCGGGACGAGGGCCTCCATCAGGAG 60125 ||||||||||| | |||||||||||||| || ||||| |||||||||||||| || Sbjct 601 ATGCCGGGCCTCACCTTCTCCAACGAGCTCATCTCCCGCGACGAGGGCCTCCACTGCGAC 542 Query 60126 TTTGCAGTGAC-GCTCTATTCACACCT-ATTGGAAAAAT--GCCCTTCCAAGGATATTCA 60181 || || || | ||||| | ||| || || | | ||| | | | Sbjct 541 TTCGC-CTGCCTCCTCTACGACCTCCTCCGCGGCAAGCTCGACGAGTCCCGCG---TCCG 486 Query 60182 CAAGATTGT-TCAGTGGGCTTGTGAAGTGGAGAGCGAGTTCATCACAGAAGCGCTTCCAT 60240 | |||| || | | | | | || | ||| |||||||| || || ||||| |||| Sbjct 485 CGAGATCGTCGCCGACGCCGT-CGACATCGAGCGCGAGTTCGTCTGCGACGCGCTCCCAT 427 Query 60241 GCAAACTCATAGGTATGGACGCTGGAGAAATGACGCAGTACATTCAGTTTGTCGCGGACC 60300 || ||| | || ||| ||| | |||| |||||||| |||| ||||| |||| Sbjct 426 GCGCGCTCGTCGGCATGAACGGCGTGCTCATGAGCCAGTACATCGAGTTCGTCGCCGACC 367 Query 60301 GC---CTCATGGCCCAGTTTGG--AGAAGGACCAATTTACGGCGTGAATAACCCTTTCGA 60355 || |||||||| | | || | ||| | || ||| ||| ||||| ||||| Sbjct 366 GCCTGCTCATGGC---GCTGGGCCACAAGAA--GATGTACAACGTCGCCAACCCATTCGA 312 Query 60356 CTGGATGGAGACCATCTCGTTGGAAGGGAAGACCAACTTCTTTGAGAAGCGGGTCGGGGA 60415 |||||||||| ||||| || | || |||||||||||||| |||||||| ||||| || Sbjct 311 CTGGATGGAGCTAATCTCCCTGCAGGGCAAGACCAACTTCTTCGAGAAGCGCGTCGGCGA 252 Query 60416 TTA 60418 || Sbjct 251 GTA 249 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548429610377520