Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eragrostis_20tef_20[genbank_20GCA_5F000970635.1_202015-04-08] 13,883 sequences; 607,317,615 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq1443 165 9e-36 seq3634 158 1e-33 seq2021 95.1 1e-14 seq1414 93.3 5e-14 seq838 91.5 2e-13 seq5104 89.7 6e-13 seq4690 89.7 6e-13 seq3363 89.7 6e-13 seq1983 89.7 6e-13 seq1772 89.7 6e-13 seq1281 89.7 6e-13 seq1098 89.7 6e-13 seq506 89.7 6e-13 seq421 89.7 6e-13 seq59 89.7 6e-13 seq99 86.0 7e-12 seq4408 82.4 8e-11 >seq1443 Length=121453 Score = 165 bits (182), Expect = 9e-36 Identities = 497/755 (66%), Gaps = 28/755 (4%) Strand=Plus/Plus Query 74463 TAATCACCGACCCGCTTTTCAAAAAAGTTGGTCTTCCCTTCCAACGAGATGTTCTCCATC 74522 || || ||||| ||||| || || ||||||||||| || | || |||||| ||||||| Sbjct 25381 TACTCGCCGACGCGCTTCTCGAAGAAGTTGGTCTTGCCCTGCAGGGAGATGAGCTCCATC 25440 Query 74523 CAGTCGAAAGGGTTCTTTGCACCGTAAATAGGCTTCTCCCCAAACTGTGCCATGAG---G 74579 |||||||| ||||| | | ||| || ||| | ||| | |||||||||| | Sbjct 25441 CAGTCGAATGGGTTGGTGACGTTGTACATCTTCTTGTGCCCCA---GTGCCATGAGCAGG 25497 Query 74580 CGATCCGCCACAAATTGAATGTACTGCGTCATTTCTCCCGCATCCATGCCGATGAGTTTG 74639 || || || || || | |||||||| |||| | | | |||||||| ||| | Sbjct 25498 CGGTCGGCGACGAACTCGATGTACTGGCTCATGAGCACGCCGTTCATGCCGACGAGCGCG 25557 Query 74640 CACGGCAGTGCCTCGGTGATAAACTCACTCTCCACCTCGCAAGCCCATTGGACAATCTTG 74699 || || || || ||| || ||||| | ||| | ||| || ||| |||| | Sbjct 25558 CATGGGAGCGCGTCGCAGACGAACTCGCGCTCGATGTCGACGGCGTCGGCGACGATCTCG 25617 Query 74700 TGAATG------TCTTTGGAAGGGCACTTTTCCCTCAGGTGAGAGTAAAGC-GTCACGGC 74752 | | | || | | || ||| | | ||| | ||| || | || ||| Sbjct 25618 CGGACGCGGGACTCGTCG--AG----CTTGCCGCGGAGGAGGTCGTAGAGGAGGCA-GGC 25670 Query 74753 AAACTCCTGATGCGAGCCTTCATCTCTGCTTATCAATTCATTCGAAAACGAAAGGCCAGG 74812 || || || ||| || || | | || | || || || || | ||||| || Sbjct 25671 GAAGTCGCAGTGGAGGCCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAGGTGAGGCCCGG 25730 Query 74813 CATAAGTCCACGCTTCTTCAACCAAAAGATGGCACAGAAGGAACCACTGAAGAAGATGCC 74872 ||| || || |||||||| | ||| |||||||| |||||||| || |||||||||||| Sbjct 25731 CATGAGGCCGCGCTTCTTGAGCCAGAAGATGGCGCAGAAGGAGCCCGAGAAGAAGATGCC 25790 Query 74873 TTCGACACACGCAAAGGCGACAAGGCGTTGCGCGAACGGTGCATCG--GAAGTC-ATCCA 74929 ||||| || || |||||||| ||||| | ||||| | || ||| | ||| ||||| Sbjct 25791 CTCGACGCAGGCGAAGGCGACTAGGCGCTCGGCGAA--GCGC-TCGCCGCCGTCGATCCA 25847 Query 74930 AGTCTGAGCCCATTCAGCTTTTCGTTTGACCGCAGGGACAGTATCGATCGCTTGGAAGAG 74989 | ||||| || || || || ||| || ||||| || ||||| || ||||||| Sbjct 25848 GCGCATGGCCCACTCGGCCTTGCGGCGGACGGCGGGGACCGTCTCGATGGCGCGGAAGAG 25907 Query 74990 GCTTGCCTTCTCTTCGGGATCCTTGACGAGCTTGTCAATCATAAGTGAGTACGTCTCCGA 75049 || ||||||| || || || | | | || | || || |||||| ||||||| Sbjct 25908 GCGGTCCTTCTCGGCGCCGTCGCGGATGTACGTCTCCAGCAGCAGCGAGTACATCTCCGA 25967 Query 75050 ATGAATCGACTCGTTGAACGA-CTGGTACGCGTAGAAAGACCGCGCCTCTGCAATCTGTA 75108 || || |||| || ||| |||| | ||||||| | |||||||| || | ||| | Sbjct 25968 GTGGATGTTCTCGATG-GCGATCTGGAAGCCGTAGAAGGCGCGCGCCTCGGCGACCTGCA 26026 Query 75109 CATCCTTTGAAAAATTCATGTCGATATTCTCCATGACGATGCCGTCCGAGGCGGCGAAAA 75168 | || || | ||| ||||| | ||||||||||||||||||||||| | Sbjct 26027 CGTCGGACATGAAGCGGGAGGCGAGGTTCTCGAGCACGATGCCGTCCGAGGCGGCGAAGA 26086 Query 75169 AAGCCAGTACCATTTTGATAAAGTGGCGCTCATCG 75203 | || || || ||| ||||||||||| ||| Sbjct 26087 AGGCGAGCACGTGGGAGATGAAGTGGCGCTCGTCG 26121 >seq3634 Length=55208 Score = 158 bits (174), Expect = 1e-33 Identities = 281/403 (70%), Gaps = 8/403 (2%) Strand=Plus/Plus Query 74805 AGGCCAGGCATAAGTCCACGCTTCTTCAACCAAAAGATGGCACAGAAGGAACCACTGAAG 74864 ||||| ||||| || || |||||||| | ||| |||||||| |||||||| || |||| Sbjct 591 AGGCCCGGCATGAGGCCGCGCTTCTTGAGCCAGAAGATGGCGCAGAAGGAGCCCGAGAAG 650 Query 74865 AAGATGCCTTCGACACACGCAAAGGCGACAAGGCGTTGCGCGAACGGTGCATCG--GAAG 74922 |||||||| ||||| || || |||||||| ||||| | ||||| | || ||| | | Sbjct 651 AAGATGCCCTCGACGCAGGCGAAGGCGACTAGGCGCTCGGCGAA--GCGC-TCGCCGCCG 707 Query 74923 TC-ATCCAAGTCTGAGCCCATTCAGCTTTTCGTTTGACCGCAGGGACAGTATCGATCGCT 74981 || ||||| | ||||| || || || || ||| || ||||| || ||||| || Sbjct 708 TCGATCCAGCGCATGGCCCACTCGGCCTTGCGGCGGACGGCGGGGACCGTCTCGATGGCG 767 Query 74982 TGGAAGAGGCTTGCCTTCTCTTCGGGATCCTTGACGAGCTTGTCAATCATAAGTGAGTAC 75041 ||||||||| ||||||| || || || | | | || | || || |||||| Sbjct 768 CGGAAGAGGCGGTCCTTCTCGGCGCCGTCGCGGATGTACGTCTCCAGCAGCAGCGAGTAC 827 Query 75042 GTCTCCGAATGAATCGACTCGTTGAACGA-CTGGTACGCGTAGAAAGACCGCGCCTCTGC 75100 ||||||| || || |||| || ||| |||| | ||||||| | |||||||| || Sbjct 828 ATCTCCGAGTGGATGTTCTCGATG-GCGATCTGGAAGCCGTAGAAGGCGCGCGCCTCGGC 886 Query 75101 AATCTGTACATCCTTTGAAAAATTCATGTCGATATTCTCCATGACGATGCCGTCCGAGGC 75160 | ||| || || || | ||| ||||| | ||||||||||||||||| Sbjct 887 GACCTGCACGTCGGACATGAAGCGGGAGGCGAGGTTCTCGAGCACGATGCCGTCCGAGGC 946 Query 75161 GGCGAAAAAAGCCAGTACCATTTTGATAAAGTGGCGCTCATCG 75203 |||||| || || || || ||| ||||||||||| ||| Sbjct 947 GGCGAAGAAGGCGAGCACGTGGGAGATGAAGTGGCGCTCGTCG 989 >seq2021 Length=98044 Score = 95.1 bits (104), Expect = 1e-14 Identities = 71/82 (87%), Gaps = 1/82 (1%) Strand=Plus/Minus Query 79619 CCAGACTGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT- 79677 ||| | |||||||| |||| | || |||| ||||||||||||||||||||||||||| Sbjct 74968 CCAAAATGCTTTCGTTGAGAGTCGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTA 74909 Query 79678 ACCAATTGAGCTACGAAAGCAA 79699 ||||| |||||||||||||||| Sbjct 74908 ACCAACTGAGCTACGAAAGCAA 74887 >seq1414 Length=123368 Score = 93.3 bits (102), Expect = 5e-14 Identities = 68/78 (87%), Gaps = 1/78 (1%) Strand=Plus/Plus Query 79621 AGACTGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-AC 79679 ||| |||||||| |||| | || |||| ||||||||||||||||||||||||||| || Sbjct 15461 AGAATGCTTTCGTTGAGAGTCGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAAC 15520 Query 79680 CAATTGAGCTACGAAAGC 79697 ||| |||||||||||||| Sbjct 15521 CAACTGAGCTACGAAAGC 15538 >seq838 Length=163291 Score = 91.5 bits (100), Expect = 2e-13 Identities = 66/75 (88%), Gaps = 1/75 (1%) Strand=Plus/Minus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 |||||||| |||| | || |||| ||||||||||||||||||||||||||| ||||| Sbjct 90819 TGCTTTCGTTGAGAGTCGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 90760 Query 79684 TGAGCTACGAAAGCA 79698 ||||||||||||||| Sbjct 90759 TGAGCTACGAAAGCA 90745 Score = 91.5 bits (100), Expect = 2e-13 Identities = 66/75 (88%), Gaps = 1/75 (1%) Strand=Plus/Minus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 |||||||| |||| | || |||| ||||||||||||||||||||||||||| ||||| Sbjct 94207 TGCTTTCGTTGAGAGTCGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 94148 Query 79684 TGAGCTACGAAAGCA 79698 ||||||||||||||| Sbjct 94147 TGAGCTACGAAAGCA 94133 >seq5104 Length=33297 Score = 89.7 bits (98), Expect = 6e-13 Identities = 65/74 (88%), Gaps = 1/74 (1%) Strand=Plus/Plus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 |||||||| |||| | || |||| ||||||||||||||||||||||||||| ||||| Sbjct 18767 TGCTTTCGTTGAGAGTCGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 18826 Query 79684 TGAGCTACGAAAGC 79697 |||||||||||||| Sbjct 18827 TGAGCTACGAAAGC 18840 >seq4690 Length=38530 Score = 89.7 bits (98), Expect = 6e-13 Identities = 65/74 (88%), Gaps = 1/74 (1%) Strand=Plus/Minus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 |||||||| |||| | || |||| ||||||||||||||||||||||||||| ||||| Sbjct 25983 TGCTTTCGTTGAGAGTCGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 25924 Query 79684 TGAGCTACGAAAGC 79697 |||||||||||||| Sbjct 25923 TGAGCTACGAAAGC 25910 >seq3363 Length=61180 Score = 89.7 bits (98), Expect = 6e-13 Identities = 65/74 (88%), Gaps = 1/74 (1%) Strand=Plus/Plus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 |||||||| |||| | || |||| ||||||||||||||||||||||||||| ||||| Sbjct 48265 TGCTTTCGTTGAGAGTCGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 48324 Query 79684 TGAGCTACGAAAGC 79697 |||||||||||||| Sbjct 48325 TGAGCTACGAAAGC 48338 >seq1983 Length=99572 Score = 89.7 bits (98), Expect = 6e-13 Identities = 65/74 (88%), Gaps = 1/74 (1%) Strand=Plus/Plus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 |||||||| |||| | || |||| ||||||||||||||||||||||||||| ||||| Sbjct 93942 TGCTTTCGTTGAGAGTCGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 94001 Query 79684 TGAGCTACGAAAGC 79697 |||||||||||||| Sbjct 94002 TGAGCTACGAAAGC 94015 >seq1772 Length=107347 Score = 89.7 bits (98), Expect = 6e-13 Identities = 65/74 (88%), Gaps = 1/74 (1%) Strand=Plus/Plus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 |||||||| |||| | || |||| ||||||||||||||||||||||||||| ||||| Sbjct 29271 TGCTTTCGTTGAGAGTCGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 29330 Query 79684 TGAGCTACGAAAGC 79697 |||||||||||||| Sbjct 29331 TGAGCTACGAAAGC 29344 >seq1281 Length=131021 Score = 89.7 bits (98), Expect = 6e-13 Identities = 65/74 (88%), Gaps = 1/74 (1%) Strand=Plus/Minus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 |||||||| |||| | || |||| ||||||||||||||||||||||||||| ||||| Sbjct 61300 TGCTTTCGTTGAGAGTCGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 61241 Query 79684 TGAGCTACGAAAGC 79697 |||||||||||||| Sbjct 61240 TGAGCTACGAAAGC 61227 >seq1098 Length=143734 Score = 89.7 bits (98), Expect = 6e-13 Identities = 65/74 (88%), Gaps = 1/74 (1%) Strand=Plus/Minus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 |||||||| |||| | || |||| ||||||||||||||||||||||||||| ||||| Sbjct 126919 TGCTTTCGTTGAGAGTCGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 126860 Query 79684 TGAGCTACGAAAGC 79697 |||||||||||||| Sbjct 126859 TGAGCTACGAAAGC 126846 >seq506 Length=203035 Score = 89.7 bits (98), Expect = 6e-13 Identities = 65/74 (88%), Gaps = 1/74 (1%) Strand=Plus/Minus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 |||||||| |||| | || |||| ||||||||||||||||||||||||||| ||||| Sbjct 17352 TGCTTTCGTTGAGAGTCGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 17293 Query 79684 TGAGCTACGAAAGC 79697 |||||||||||||| Sbjct 17292 TGAGCTACGAAAGC 17279 >seq421 Length=215278 Score = 89.7 bits (98), Expect = 6e-13 Identities = 65/74 (88%), Gaps = 1/74 (1%) Strand=Plus/Minus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 |||||||| |||| | || |||| ||||||||||||||||||||||||||| ||||| Sbjct 52117 TGCTTTCGTTGAGAGTCGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 52058 Query 79684 TGAGCTACGAAAGC 79697 |||||||||||||| Sbjct 52057 TGAGCTACGAAAGC 52044 >seq59 Length=380276 Score = 89.7 bits (98), Expect = 6e-13 Identities = 66/76 (87%), Gaps = 1/76 (1%) Strand=Plus/Plus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 |||||||| |||| | || |||| |||||||||||||||||||||||| || ||||| Sbjct 317708 TGCTTTCGTTGAGAGTCGAACTCAAGACCTCCCGCTTACTAAACGGGTGCCCTAACCAAC 317767 Query 79684 TGAGCTACGAAAGCAA 79699 |||||||||||||||| Sbjct 317768 TGAGCTACGAAAGCAA 317783 >seq99 Length=342384 Score = 86.0 bits (94), Expect = 7e-12 Identities = 64/74 (86%), Gaps = 1/74 (1%) Strand=Plus/Plus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 |||||||| | || | || |||| ||||||||||||||||||||||||||| ||||| Sbjct 248650 TGCTTTCGTTAAGAGTCGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 248709 Query 79684 TGAGCTACGAAAGC 79697 |||||||||||||| Sbjct 248710 TGAGCTACGAAAGC 248723 >seq4408 Length=42689 Score = 82.4 bits (90), Expect = 8e-11 Identities = 65/77 (84%), Gaps = 1/77 (1%) Strand=Plus/Minus Query 79622 GACTGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACC 79680 || |||||||| |||| | | |||| ||||||||||||||||| ||||||||| ||| Sbjct 1395 GAATGCTTTCGTTGAGAGTCGGACTCAAGACCTCCCGCTTACTAAATGGGTGCTCTAACC 1336 Query 79681 AATTGAGCTACGAAAGC 79697 || |||||||||||||| Sbjct 1335 AACTGAGCTACGAAAGC 1319 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547121037503400