Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eragrostis_20tef_20[genbank_20GCA_5F000970635.1_202015-04-08] 13,883 sequences; 607,317,615 total letters Query= NC_028758.1 Length=35644 Score E Sequences producing significant alignments: (Bits) Value seq9885 96.9 8e-16 >seq9885 Length=2412 Score = 96.9 bits (106), Expect = 8e-16 Identities = 172/253 (68%), Gaps = 11/253 (4%) Strand=Plus/Plus Query 14253 CAAGTAAATATGGCATCAAATGTCCGAACAAGATGACACCAAAATATATTACGTTTCACA 14312 |||| ||||| ||||| ||||| | |||| | || | || ||||| | || | Sbjct 1808 CAAGCAAATACCCAATCAAGTGTCCTTATTCTATGAAAGCAGAGTACATTACAGTGCATA 1867 Query 14313 ATACGGCTAATGATGCGCCTGCAGAAAATGAGATCCGTTATATGATCGGTAACAATAACG 14372 | || ||||||||||||||| | || ||| | ||| |||||||| || Sbjct 1868 ACACTTATAATGATGCGCCTGCTAAGAACGAGGTAAATTACATGATCGGAAA-------- 1919 Query 14373 AGGTTTCGTTCCACGTTGCTGTGGACGATAAGGAAGCAGTTCAGGGAATTCCTTTTGATC 14432 |||| |||||| | || || || |||| |||| |||| || ||||| |||||| Sbjct 1920 ---TTTCATTCCACTTCGCAGTAGATGATATCGAAGTTATTCAAGGTATTCCGGTTGATC 1976 Query 14433 GAAACGCCTGGCATTGCGGAGATGGAAACGGAACAGGAAACCGTCAATCCATCGGCGTAG 14492 | || || |||||||| || ||||| || | |||||||| |||| ||||| || | Sbjct 1977 GTAATGCTTGGCATTGTGGTGATGGTGGTGGTAACGGAAACCGAAAATCTATCGGTGTTG 2036 Query 14493 AGATTTGTTATTC 14505 | || ||||| || Sbjct 2037 AAATCTGTTACTC 2049 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 113920415912276