Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eragrostis_20tef_20[genbank_20GCA_5F000970635.1_202015-04-08] 13,883 sequences; 607,317,615 total letters Query= NC_028841.1 Length=44952 Score E Sequences producing significant alignments: (Bits) Value seq9885 89.7 1e-13 >seq9885 Length=2412 Score = 89.7 bits (98), Expect = 1e-13 Identities = 144/209 (69%), Gaps = 11/209 (5%) Strand=Plus/Plus Query 19627 TATATTACGTTTCACAACACGTCCAATGATGCTCCTGCAGAAAATGAGATCCGTTATATG 19686 || ||||| | || ||||| | |||||||| ||||| | || ||| | ||| ||| Sbjct 1852 TACATTACAGTGCATAACACTTATAATGATGCGCCTGCTAAGAACGAGGTAAATTACATG 1911 Query 19687 ATCGGGAATAATAATGAGGTTTCGTTCCACGTTGCTGTGGACGATAAGGAAGCTGTTCAG 19746 ||||| ||| ||| |||||| | || || || |||| |||| | |||| Sbjct 1912 ATCGGAAAT-----------TTCATTCCACTTCGCAGTAGATGATATCGAAGTTATTCAA 1960 Query 19747 GGCATTCCTTTTGATCGTAATGCCTGGCATTGTGGAGACGGGAACGGAACAGGTAACCGT 19806 || ||||| ||||||||||||| ||||||||||| || || || | || ||||| Sbjct 1961 GGTATTCCGGTTGATCGTAATGCTTGGCATTGTGGTGATGGTGGTGGTAACGGAAACCGA 2020 Query 19807 CAGTCCATCGGCGTAGAGATTTGCTATTC 19835 | || ||||| || || || || || || Sbjct 2021 AAATCTATCGGTGTTGAAATCTGTTACTC 2049 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 143701105439644