Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eragrostis_20tef_20[genbank_20GCA_5F000970635.1_202015-04-08] 13,883 sequences; 607,317,615 total letters Query= NC_028890.1 Length=162486 Score E Sequences producing significant alignments: (Bits) Value seq9627 201 1e-46 seq10635 120 3e-22 >seq9627 Length=3127 Score = 201 bits (222), Expect = 1e-46 Identities = 232/314 (74%), Gaps = 15/314 (5%) Strand=Plus/Plus Query 141946 AAGAGGAGAAATACTATTATGAAAATCGTTAGCGTTGGTACTACATACAGAATCTATGGG 142005 || ||||| |||| || |||||||| ||| | | || | ||| || | ||| || || Sbjct 332 AAAAGGAGCAATA-TAAAATGAAAATTATTAACTTCGGAAGTACTTATAAAATTTACGGT 390 Query 142006 GATGACTTAAAAACTTATGACAAATTACCTGCGGGTACATATAAAGCTGAGTTCCACCCA 142065 |||||||||||||||||||||||| |||| || | |||||| || || Sbjct 391 GATGACTTAAAAACTTATGACAAACTACCAGCTGCTACATACAA--------------CA 436 Query 142066 CGATCAGGCTTCTTCCTAGAAAGAATTGACAACTTCGTATCTAAAGAAGAAAAGATTTAC 142125 ||||||| |||| |||| | ||||| ||||| | ||| | |||| ||||||||| Sbjct 437 AGATCAGGTTTCTCTTTAGAGAAGATTGATAACTTTGAATCAACGGAAGCAAAGATTTAT 496 Query 142126 GGTAGCCACCAGGAAAAGATTGATAAAGTTCTAAAATCATACAACAAGTTCGATCGCAGC 142185 || || |||| ||||| ||| ||||||| |||||||||| | || || || || ||| Sbjct 497 GGAAGTCACCCAGAAAAAATTAATAAAGTATTAAAATCATATGAAAAATTTGAACGTAGC 556 Query 142186 TTAGGTATTATCTTAAGTGGTCACAAAGGTATGGGTAAATCAATGTTCGTACAATTAATC 142245 |||||| ||||||| |||||| ||||||| ||||||||||| ||||| || ||| | || Sbjct 557 TTAGGTCTTATCTTGAGTGGTAACAAAGGAATGGGTAAATCTATGTTTGTTCAACTTATT 616 Query 142246 GGTGAACGAGTTGT 142259 | ||| |||||| Sbjct 617 GCAGAAGCAGTTGT 630 Score = 197 bits (218), Expect = 1e-45 Identities = 166/204 (81%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 142345 TTAGTTGTATTCGATGAGTTTGAAAAGATGTTCAACCCACGCAATGAGGAAGCAGAAAAG 142404 ||| || | || ||||||||||||||||||||||| || || ||||| ||||||||||| Sbjct 678 TTAATTATCTTGGATGAGTTTGAAAAGATGTTCAATCCTCGTAATGAAGAAGCAGAAAAA 737 Query 142405 CAAGACAGCTTACTAGGGCTATTCGATGGTACATCTCAAAAGAAACGTATGTATGCTATC 142464 || || | |||||| ||| |||| |||||||| ||||| ||||||||||| ||||| || Sbjct 738 CAGGAAAACTTACTGGGGTTATTTGATGGTACTTCTCAGAAGAAACGTATCTATGCGATT 797 Query 142465 ACAGTTAACGATTTACATAAAGTGAACAGCTTCATGCTTAGTCGTCCTGGTCGATTCCAT 142524 || || |||||| | |||| || || || ||| | || |||||||||||||||||| Sbjct 798 ACGGTAAACGATCTTAATAAGGTAAATGAGTTTATGTTAAGCCGTCCTGGTCGATTCCAT 857 Query 142525 TACCATATCCGTTTCGACTATCCA 142548 ||||||||||| || || |||||| Sbjct 858 TACCATATCCGATTTGATTATCCA 881 >seq10635 Length=1693 Score = 120 bits (132), Expect = 3e-22 Identities = 255/379 (67%), Gaps = 4/379 (1%) Strand=Plus/Minus Query 91607 TGGATGGAAGATAGAACGATTATTTTAGCTCCATATGGTTCTCGTGCTAATGGGACAGAG 91666 ||| | ||||||||||| || | || |||| ||| | ||| |||| ||||| Sbjct 1361 TGGTTAGAAGATAGAACAATCCTCTTGTCTCCTACAGGTAGTTATGCCTATGGAACAGAT 1302 Query 91667 ACAGAGGACTCAGATCATGACTTTAGAGGTGTATGTATTCCGCCTATCGATTACTACTTA 91726 ||||| |||||| | |||| || |||||||| || || || | || || |||||| Sbjct 1301 ACAGATACATCAGATAAGGACTATAAGGGTGTATGCATCCCACCAGTTGAGTATTACTTA 1242 Query 91727 GGGCTTGAGTCATTTAAAGGTTATGATAACGTAGGATCGAAAAACTTTAGAAGCACGAAA 91786 || | || |||||||| | || | | ||| |||||||| |||| |||||| Sbjct 1241 GGTTTGGATTCATTTAATGAGTACAACACATCAGGTGGTAAAAACTTCAGAAACACGAAG 1182 Query 91787 GATTCTGTAGATATTAGAATAGACCCTATCAACAAGTTTGTAAAGGATGCTATGTCAAGT 91846 ||| ||| ||| | | || | | | ||||||||||| | ||||||||| ||| Sbjct 1181 GATGATGTCGATGTAAACATCATTCATGTGAACAAGTTTGTTAGAGATGCTATGCAAAGC 1122 Query 91847 TCACCGAACAGTATTGAATTACTATTTACAAGACCCCAGGACTACATAAAGGTCAGTGCG 91906 ||| || | || || | |||||| | || |||| ||||| ||||| | | | Sbjct 1121 GTACCTAATAACATCGAGATCCTATTTGTTCGTCCGGAGGATTACATCAAGGTTACTCCA 1062 Query 91907 CTAGGTCAACTATTAATTGACAATAGACACTTATTCCTGTCTAAACTTGTTAAAGGTA-- 91964 || || ||| | ||||| || || | ||||||||| | || ||| |||| ||| Sbjct 1061 CTCGGACAAATCTTAATCGATAACCGTCACTTATTCTTATCAAAAAACATTAA--GTACC 1004 Query 91965 GATTCGGTGGTTTTGCTAG 91983 |||||||||| | ||| || Sbjct 1003 GATTCGGTGGATATGCAAG 985 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 519736990487280