Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eragrostis_20tef_20[genbank_20GCA_5F000970635.1_202015-04-08] 13,883 sequences; 607,317,615 total letters Query= NC_028955.1 Length=197361 Score E Sequences producing significant alignments: (Bits) Value seq659 286 4e-72 seq5971 253 3e-62 seq1199 206 3e-48 seq674 134 2e-26 seq3548 107 2e-18 seq1348 102 1e-16 seq1969 91.5 2e-13 seq960 87.8 2e-12 seq64 82.4 1e-10 >seq659 Length=182381 Score = 286 bits (316), Expect = 4e-72 Identities = 435/613 (71%), Gaps = 6/613 (1%) Strand=Plus/Plus Query 185744 TTCATGGGTGGTTTCCATCCACAAACAGAGGCATTATGGTTGACTGATATAGCACATCAT 185803 ||| |||| | || |||||||||||| | || ||| |||| ||||| || |||||| Sbjct 74522 TTCTTGGGGGATT--CATCCACAAACACAAAGTTTGTGGCTGACCGATATTGCTCATCAT 74579 Query 185804 CACCTTGCAATAGGAGTAATATTCATTATTGCAGGTCATATGTATAGAAGTGCTTGGGGT 185863 || | || || | | | || || | ||||| |||||||||||| ||| | | || Sbjct 74580 CATTTAGCTATTGCATTTATTTTTCTCATTGCTGGTCATATGTATCGAACTAACTTCGGA 74639 Query 185864 ATTGGTCACTCAATGAAGGAGATACTTGAAGCACATACACCACCAAGAGGAGGACTAGGT 185923 ||||| ||| || || || | | ||||||||||| || || | || || |||| Sbjct 74640 ATTGGGCACAGTATCAAAGATCTTTTAGAAGCACATACTCCTCCGGGGGGTCGATTAGGA 74699 Query 185924 GCAGGTCATAAAGGATTATATGAAACAGTTACAGACTCATTACACCTACAGTTAGGTCTT 185983 || |||||||| | ||||| ||| | | | || | || | || ||||||||| Sbjct 74700 CGTGGGCATAAAGGCCTTTATGATACAATCAATAATTCGATTCATTTTCAATTAGGTCTT 74759 Query 185984 GCACTTGCATCTCTAGGTGTTGTTACTAGTCTGGTGGCACAACATATGTACTCAATGCCA 186043 || || || || |||| ||| ||||| | || || |||||||||||||| | || Sbjct 74760 GCTCTAGCTTCCTTAGGGGTTATTACTTCCTTAGTAGCTCAACATATGTACTCTTTACCT 74819 Query 186044 TCCTATGCTTTCATAGCACAGGCGCATACTACGCAAGCTGCTCTATATGTTCATCATCAA 186103 | ||||| ||||||||||| | |||||| ||||||||| ||||| |||||| ||| Sbjct 74820 GCTTATGCATTCATAGCACAAGACTTTACTACTCAAGCTGCTTTATATACTCATCACCAA 74879 Query 186104 TACATTGCAACTGCTC-TGATGGTTGGTGCTTTTGCGCATGGAGCAATATTTTTTGTTAG 186162 |||||||| | | || | ||| || |||||||| |||||||| || ||||| |||| Sbjct 74880 TACATTGC-AGGGTTCATCATGACAGGGGCTTTTGCTCATGGAGCTATTTTTTTCATTAG 74938 Query 186163 AGACTTTGATCCTACTCTGAATAAGGACAATGTTCTTGATAGAATGCTACAGCACAAAGA 186222 || | |||| | |||| |||| ||||| | | |||||| || | || ||||| Sbjct 74939 GGATTACAATCCGGAACAGAATGAGGATAATGTATTGGCAAGAATGTTAGACCATAAAGA 74998 Query 186223 AGCAATTATAAGTCACTTAAGTTGGG-TATCACTATTCCTTGGATTCCATACTTTAGGAA 186281 ||| || ||| ||| |||||||||| || | |||||||| ||||||||||| || || Sbjct 74999 AGCTATCATATCTCATTTAAGTTGGGCTAGC-CTATTCCTAGGATTCCATACCTTGGGCC 75057 Query 186282 TCTATGTCCATAATGATGTAGTAATGGCATTTGGTCATCCTGAGAGACAGATATTAATTG 186341 | ||||| ||||| || || | | || |||||| ||| || | || || || || | Sbjct 75058 TTTATGTTCATAACGACGTCATGCTTGCTTTTGGTACTCCAGAAAAGCAAATCTTGATCG 75117 Query 186342 AACCTATATTTGC 186354 |||| |||||||| Sbjct 75118 AACCCATATTTGC 75130 Score = 89.7 bits (98), Expect = 6e-13 Identities = 91/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 183629 AGTCTTTGGATGACAGATATAGCACATCATCACCTAGCAATAGCAGTTATGTTTATCATT 183688 ||| | ||| |||| ||||| || |||||||| |||| || ||| |||| ||| ||||| Sbjct 74550 AGTTTGTGGCTGACCGATATTGCTCATCATCATTTAGCTATTGCATTTATTTTTCTCATT 74609 Query 183689 GCAGGTCATATGTATCGCACAAACTGGGGTATTGGTCAATCAATGAAAGAGATATTAGA 183747 || |||||||||||||| || |||| || ||||| || || ||||| | ||||| Sbjct 74610 GCTGGTCATATGTATCGAACTAACTTCGGAATTGGGCACAGTATCAAAGATCTTTTAGA 74668 >seq5971 Length=23604 Score = 253 bits (280), Expect = 3e-62 Identities = 427/616 (69%), Gaps = 18/616 (3%) Strand=Plus/Minus Query 183615 ATCCTGTAACTGGCAGTCTTTGGATGACAGATATAGCACATCATCACCTAGCAATAGCAG 183674 |||| |||| || |||| ||| ||| ||||| || || ||||| ||| || || Sbjct 22456 ATCCAATAACCGGTGGTCTATGGTTGAGCGATATTGCGCACCATCATTTAGTTATTGCTA 22397 Query 183675 TTATGTTTATCATTGCAGGTCATATGTATCGCACAAACTGGGGTATTGGTCAATCAATGA 183734 || | || | || || |||||||||||| | || ||||||||||||||||| | | Sbjct 22396 TTCTTTTCCTGATCGCCGGTCATATGTATAGGACCAACTGGGGTATTGGTCATGGGCTTA 22337 Query 183735 AAGAGATATTAGATGGTCAGAATGG----TTTCCC--ACAGGGTGTCACACACAGAGGAT 183788 |||| || || || | ||| || || ||| | ||||||| || | || Sbjct 22336 AAGATATTTTGGAGGCTCATAAGGGCCCATTTACAGGACAGGGT------CATAAGGGTC 22283 Query 183789 TATATGAATTTCTAGCAGAATCAAGACATGCACAACTATCACTGAATCTGGCAATGCTAG 183848 | |||||| | ||| || ||| | ||||| ||| |||| || || || || ||||||| Sbjct 22282 TCTATGAAATCCTAACAAGTTCATGGCATGCTCAATTATCTCTTAACCTAGCTATGCTAG 22223 Query 183849 GATCTATCAGTATCATAGTTTCACATCATATGTATGCAATGCCACCTTATCCATATCTTG 183908 | |||| | ||| | || | ||||||||||| | ||||| || |||||||| || | Sbjct 22222 GCTCTACAACTATTGTTGTAGCTCATCATATGTACTCTATGCCCCCCTATCCATACCTAG 22163 Query 183909 GTATTGAATATCCAACAGTAGTAGGATTATTCACCCATCATATGTGGATAGGTGGTTTTC 183968 || ||| ||| ||| | | || ||||| || || |||||||| || || |||| Sbjct 22162 CTACTGACTATGGTACACAACTTTCCTTGTTCACACACCACATGTGGATTGGCGGATTTC 22103 Query 183969 TTATTGTGGGTGCATCAGCACATGCTTCAATTGCTATGATAAGAGACTATAATC---CTG 184025 | || || ||||| | |||||||| | ||| |||| ||||||||||| ||| || Sbjct 22102 TAATAGTCGGTGCTGCTGCACATGCAGCCATTTTTATGGTAAGAGACTATGATCCAACTA 22043 Query 184026 TTCAACATATGGGAAATGTATTAGATAGAATACTTAAATCTAGAGATGCAATCATCAGTC 184085 || | | | | || |||||||| | | |||| | | ||||||||||| | Sbjct 22042 CTCGATACAACG---ATCTATTAGATCGCGTCCTTAGACACCGCGATGCAATCATATCCC 21986 Query 184086 ACTTGAACTGGGTATGCATCTTTTTAGGTTTTCATAGTTTTGGTCTTTATATTCACAATG 184145 || | ||||||||||| || ||| |||||||||| |||||||| | || ||||| |||| Sbjct 21985 ACCTTAACTGGGTATGTATATTTCTAGGTTTTCACAGTTTTGGCTTGTACATTCATAATG 21926 Query 184146 ATATTATGAGAGCATTGGGTAGACCTAATGATCTATTCAGTGATACAGCAATACAATTAC 184205 ||| ||||| || || || | || | ||| | || ||||| || |||||||||| Sbjct 21925 ATACCATGAGTGCTTTAGGCCGTCCCCAAGATATGTTTTCGGATACCGCCATACAATTAC 21866 Query 184206 AACCTGTATTTGCACA 184221 |||| | ||||| || Sbjct 21865 AACCCATCTTTGCTCA 21850 Score = 127 bits (140), Expect = 3e-24 Identities = 171/235 (73%), Gaps = 5/235 (2%) Strand=Plus/Minus Query 184323 TAGGTACAGCAGACTTTATGATACATCACATACACGCTTTCCAGATTCATGTTTGTGTAT 184382 |||| || ||||| ||| | | |||||||| ||||| || || ||||| ||||| Sbjct 21718 TAGGAACCGCAGATTTTTTAGTCCATCACATTCACGCATTTACCATCCATGTGACTGTAT 21659 Query 184383 TAATTCTTCTCAAGGGTGTTTTATACTCTAGAAACTCACAATTAATACCAGATAAGAGTA 184442 |||| ||| | || |||||||||| || | | || | || ||||| ||||| || | Sbjct 21658 TAATACTTTTGAAAGGTGTTTTATTTGCTCGCAGTTCCCGTTTGATACCTGATAA-AGCA 21600 Query 184443 AGT-TAGGATTCAGATTCCCTTGTGATGGTCCTGGTAGAGGAGGCACTTGTCAGGTATCA 184501 | | | || || |||||||| | || || ||||| |||| || || ||||| ||||| Sbjct 21599 AATCTTGGTTTTCGATTCCCTAGCGACGGGCCTGGACGAGGGGGAACATGTCAAGTATCT 21540 Query 184502 GGATGGGATCATGTATTCCTTGGTTTATTCTGGATGTATAA---TTGCATCTCTA 184553 | ||||||||||| ||| | ||| ||||||||||||| || |||| | |||| Sbjct 21539 GCCTGGGATCATGTTTTCTTAGGTCTATTCTGGATGTACAAGGCTTGCGTTTCTA 21485 >seq1199 Length=136694 Score = 206 bits (228), Expect = 3e-48 Identities = 307/434 (71%), Gaps = 6/434 (1%) Strand=Plus/Plus Query 183791 TATGAATTTCTAGCAGAATCAAGACATGCACAACTATCACTGAATCTGGCAATGCTAGGA 183850 |||||| | ||| || ||| | ||||| ||| |||| || || || || |||||||| Sbjct 5098 TATGAAATCCTAACAACGTCATGGCATGCTCAATTATCTCTTAACCTAGCTATGCTAGGC 5157 Query 183851 TCTATCAGTATCATAGTTTCACATCATATGTATGCAATGCCACCTTATCCATATCTTGGT 183910 |||| | ||| | || | ||||||||||| | ||||| || |||||||| || | | Sbjct 5158 TCTACAACTATTGTTGTAGCTCATCATATGTACTCTATGCCCCCCTATCCATACCTAGCT 5217 Query 183911 ATTGAATATCCAACAGTAGTAGGATTATTCACCCATCATATGTGGATAGGTGGTTTTCTT 183970 | ||| ||| ||| | | || ||||| || || |||||||| || || ||||| Sbjct 5218 ACTGACTATGGTACACAACTTTCCTTGTTCACACACCACATGTGGATTGGCGGATTTCTA 5277 Query 183971 ATTGTGGGTGCATCAGCACATGCTTCAATTGCTATGATAAGAGACTATAATC---CTGTT 184027 || || ||||| | |||||||| | ||| |||| ||||||||||| ||| || | Sbjct 5278 ATAGTCGGTGCTGCTGCACATGCAGCCATTTTTATGGTAAGAGACTATGATCCAACTACT 5337 Query 184028 CAACATATGGGAAATGTATTAGATAGAATACTTAAATCTAGAGATGCAATCATCAGTCAC 184087 | | | | | || |||||||| | | |||| | | ||||||||||| ||| Sbjct 5338 CGATACAACG---ATCTATTAGATCGCGTCCTTAGACACCGCGATGCAATCATATCCCAC 5394 Query 184088 TTGAACTGGGTATGCATCTTTTTAGGTTTTCATAGTTTTGGTCTTTATATTCACAATGAT 184147 | ||||||||||| || ||| |||||||||| |||||||| | || ||||| |||||| Sbjct 5395 CTTAACTGGGTATGTATATTTCTAGGTTTTCACAGTTTTGGCTTGTACATTCATAATGAT 5454 Query 184148 ATTATGAGAGCATTGGGTAGACCTAATGATCTATTCAGTGATACAGCAATACAATTACAA 184207 | ||||| || || || | || | ||| | || ||||| || |||||||||||| Sbjct 5455 ACCATGAGTGCTTTAGGCCGTCCCCAAGATATGTTTTCGGATACCGCCATACAATTACAA 5514 Query 184208 CCTGTATTTGCACA 184221 || | ||||| || Sbjct 5515 CCCATCTTTGCTCA 5528 >seq674 Length=180279 Score = 134 bits (148), Expect = 2e-26 Identities = 233/336 (69%), Gaps = 2/336 (1%) Strand=Plus/Minus Query 183072 GTGCTCAAGTGGTTTGGCCTATACTTGGTCAAGAGATATTGAATGGAGATCAGGGTGCAG 183131 ||||||| || |||||||| ||| | || ||||| || |||||||| ||| || | | Sbjct 83081 GTGCTCAGGTAGTTTGGCCAATAGTAGGGCAAGAAATTTTGAATGGTGATGTAGGCGGGG 83022 Query 183132 GATATCAAGGTATTAGAATTACATCTGGTTTATTTCAGATGTGGAGAGCATGGGGTATAA 183191 | | | ||| || ||| || || ||||| |||||||| ||| |||||| || |||| Sbjct 83021 GTTTCCGAGGAATCCAAATAACCTCCGGTTTTTTTCAGATTTGGCGAGCATCTGGAATAA 82962 Query 183192 CAAATGAAACTCAACTA-ATGGCGCTAGCACTAGGTGCTTTAGTTATGGCAGCAGTTATG 183250 | | ||| ||||| || | | ||| | ||||| || || | ||| | | ||| Sbjct 82961 CTAGTGAGTTACAACTCTATTGTACG-GCAATCGGTGCATTGATTTTTGCATCGTTAATG 82903 Query 183251 TTTAATGCTGGTGCATTTCATTTTCACGTTGCTGCTCCTAAGTTATCATGGTTTCAGAAT 183310 || ||||||| || |||| |||| || ||||| || || | ||||| || || Sbjct 82902 CTTTTTGCTGGTTGGTTCCATTATCACAAAGCCGCTCCCAAATTGGCCTGGTTCCAAGAT 82843 Query 183311 GTAGAATCTATGATGAATCATCACCTTGCAGGTTTGCTTGGTCTTGGTTCTTTAGGATGG 183370 |||||||| ||| ||||||| ||| | || || || | || ||||| ||| | ||| Sbjct 82842 GTAGAATCCATGTTGAATCACCACTTAGCGGGGTTATTAGGACTTGGGTCTCTTTCTTGG 82783 Query 183371 GCAGGACATTTAATTCATATTTCAATCCCAACTAAT 183406 |||||||| ||| ||| | || | |||| |||| Sbjct 82782 GCAGGACACCAAATCCATGTATCTTTACCAATTAAT 82747 >seq3548 Length=57094 Score = 107 bits (118), Expect = 2e-18 Identities = 182/260 (70%), Gaps = 3/260 (1%) Strand=Plus/Plus Query 183148 AATTACATCTGGTTTATTTCAGATGTGGAGAGCATGGGGTATAACAAATGAAACTCAACT 183207 ||| || |||||||| |||||||| ||| |||||| || ||||| | |||| ||||| Sbjct 18714 AATAACCTCTGGTTTTTTTCAGATTTGG-GAGCATCTGGAATAACTAGTGAATTACAACT 18772 Query 183208 A-ATGGCGCTAGCACTAGGTGCTTTAGTTATGGCAGCAGTTATGTTTAATGCTGGTGCAT 183266 || | | | || | ||||| || || | ||| | | ||| || ||||||| | Sbjct 18773 CTATTGTACCA-CAATCGGTGCATTGATTTTTGCATCGTTAATGCTTTTTGCTGGTTGGT 18831 Query 183267 TTCATTTTCACGTTGCTGCTCCTAAGTTATCATGGTTTCAGAATGTAGAATCTATGATGA 183326 | |||| |||| || ||||| || || | ||||| || |||||||||| ||| ||| Sbjct 18832 TCCATTATCACAAAGCCGCTCCCAAATTGGCCTGGTTCCAAGATGTAGAATCCATGTTGA 18891 Query 183327 ATCATCACCTTGCAGGTTTGCTTGGTCTTGGTTCTTTAGGATGGGCAGGACATTTAATTC 183386 |||| ||| | || || || | || ||||| ||| | ||||||||||| ||| | Sbjct 18892 ATCACCACTTAGCGGGGTTATTAGGACTTGGGTCTCTTTCTTGGGCAGGACACCAAATCC 18951 Query 183387 ATATTTCAATCCCAACTAAT 183406 || | || | |||| |||| Sbjct 18952 ATGTATCTTTACCAATTAAT 18971 >seq1348 Length=126708 Score = 102 bits (112), Expect = 1e-16 Identities = 122/163 (75%), Gaps = 2/163 (1%) Strand=Plus/Plus Query 185039 TGGTATGGATTAGCAACTGCACATGACTTTGAGAGTCATGACAATATGACAGAAGAGAAG 185098 |||| ||| | || || |||||||| ||||| |||||||| |||| || || || | | Sbjct 108484 TGGTTTGGTATTGCTACCGCACATGATTTTGAAAGTCATGATGATATTACTGAGGA-ACG 108542 Query 185099 T-TATATCAAAAATTATTTGCTACACACTTTGGTCATCTTGCAATTATCTTTCTATGGGT 185157 | | ||||| || | |||||| | |||||||| || | ||||| |||||||||||| Sbjct 108543 TCTTTATCACAACATTTTTGCTTCTCACTTTGGGCAGTTAGCAATAATCTTTCTATGGAC 108602 Query 185158 TGCAGGTAATTTAATTCATATAGCATGGCAAGGTAACTTTGAA 185200 | || ||| | ||||| |||| |||||||| || |||||| Sbjct 108603 GTCCGGAAATCTGTTTCATGTAGCTTGGCAAGGAAATTTTGAA 108645 >seq1969 Length=99929 Score = 91.5 bits (100), Expect = 2e-13 Identities = 89/115 (77%), Gaps = 0/115 (0%) Strand=Plus/Minus Query 182615 AGAACTGAGGATTGTGTAGGATGTAAGAGATGTGAAACAGCATGTCCTACAGACTTTTTA 182674 ||||| || |||||||| || ||||||||||| ||| | || || || ||||| |||||| Sbjct 1856 AGAACCGAAGATTGTGTGGGTTGTAAGAGATGCGAATCCGCCTGCCCAACAGATTTTTTA 1797 Query 182675 AGTATTCGTGTTTACTTGGGTGCAGAAACCACAAGAAGCATGGGTCTAGCATATT 182729 ||| |||| ||||| || || | ||||| || | ||||||| ||| | |||| Sbjct 1796 AGTGTTCGCGTTTATTTAGGGCCTGAAACAACCCGCAGCATGGCGCTATCTTATT 1742 >seq960 Length=153993 Score = 87.8 bits (96), Expect = 2e-12 Identities = 95/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 182604 CTTCCTCACCTAGAACTGAGGATTGTGTAGGATGTAAGAGATGTGAAACAGCATGTCCTA 182663 |||| | || ||||| || ||||||| || ||||||||||| ||| | || || || | Sbjct 63748 CTTCTGCGCCGAGAACCGAATATTGTGTGGGTTGTAAGAGATGCGAATCCGCCTGCCCAA 63807 Query 182664 CAGACTTTTTAAGTATTCGTGTTTACTTGGGTGCAGAAACCACAAGAAGCATGGGTCTAG 182723 |||| ||||||||| |||| ||||| || || | ||||| || | ||||||| ||| Sbjct 63808 CAGATTTTTTAAGTGTTCGCGTTTATTTAGGGCCTGAAACAACCCGCAGCATGGCGCTAT 63867 Query 182724 CATATT 182729 | |||| Sbjct 63868 CTTATT 63873 >seq64 Length=375728 Score = 82.4 bits (90), Expect = 1e-10 Identities = 76/95 (80%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 188648 TTCAGTATCCTTATGAAA-AATTAATACCCTCAGAGAGATATAGAGGGAGGATACACTAT 188706 |||| | |||||||||| ||||| | |||||| ||| | | ||| ||||||| | Sbjct 194195 TTCACGACCCTTATGAAACAATTA----CATCAGAGTGATTTCGGGGGCAAATACACTTT 194250 Query 188707 GAGTTTGATAAATGTATTGCTTGTGAAGTATGTGT 188741 || ||||||||||||||||||||||||||||| || Sbjct 194251 GAATTTGATAAATGTATTGCTTGTGAAGTATGCGT 194285 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 631317623702280