Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eragrostis_20tef_20[genbank_20GCA_5F000970635.1_202015-04-08] 13,883 sequences; 607,317,615 total letters Query= NC_029132.1 Length=140122 Score E Sequences producing significant alignments: (Bits) Value seq7324 95.1 1e-14 seq2383 84.2 2e-11 >seq7324 Length=11911 Score = 95.1 bits (104), Expect = 1e-14 Identities = 97/127 (76%), Gaps = 0/127 (0%) Strand=Plus/Plus Query 34603 CTGCCAATTCTACGTCGCGAATGGGGAGCTGTCCTGCCAGCTCTATCAACGATCGGGAGA 34662 || ||| || || || | ||| |||||||| |||||||| | |||||||| || | || Sbjct 6790 CTTCCAGTTTTATGTTGAGAACGGGGAGCTATCCTGCCAAATGTATCAACGCTCTGCTGA 6849 Query 34663 CATGGGGTTAGGGGTGCCGTTCAACATTGCTAGTTACGCTCTGCTCACGTACATGATCGC 34722 |||||| | || || || ||||||||||| || |||| ||||| |||||||| || Sbjct 6850 CATGGGTCTTGGAGTTCCATTCAACATTGCATCGTATTCTCTTCTCACATACATGATTGC 6909 Query 34723 TCATGTC 34729 ||||||| Sbjct 6910 TCATGTC 6916 Score = 95.1 bits (104), Expect = 1e-14 Identities = 97/127 (76%), Gaps = 0/127 (0%) Strand=Plus/Minus Query 6616 GACATGAGCGATCATGTACGTGAGCAGAGCGTAACTAGCAATGTTGAACGGCACCCCTAA 6675 ||||||||| |||||||| ||||| |||| || ||||||||||| || || || | Sbjct 6916 GACATGAGCAATCATGTATGTGAGAAGAGAATACGATGCAATGTTGAATGGAACTCCAAG 6857 Query 6676 CCCCATGTCTCCCGATCGTTGATAGAGCTGGCAGGACAGCTCCCCATTCGCGACGTAGAA 6735 |||||||| | || |||||||| | |||||||| |||||||| ||| | || || || Sbjct 6856 ACCCATGTCAGCAGAGCGTTGATACATTTGGCAGGATAGCTCCCCGTTCTCAACATAAAA 6797 Query 6736 TTGGCAG 6742 ||| || Sbjct 6796 CTGGAAG 6790 Score = 95.1 bits (104), Expect = 1e-14 Identities = 97/127 (76%), Gaps = 0/127 (0%) Strand=Plus/Plus Query 34603 CTGCCAATTCTACGTCGCGAATGGGGAGCTGTCCTGCCAGCTCTATCAACGATCGGGAGA 34662 || ||| || || || | ||| |||||||| |||||||| | |||||||| || | || Sbjct 8732 CTTCCAGTTTTATGTTGAGAACGGGGAGCTATCCTGCCAAATGTATCAACGCTCTGCTGA 8791 Query 34663 CATGGGGTTAGGGGTGCCGTTCAACATTGCTAGTTACGCTCTGCTCACGTACATGATCGC 34722 |||||| | || || || ||||||||||| || |||| ||||| |||||||| || Sbjct 8792 CATGGGTCTTGGAGTTCCATTCAACATTGCATCGTATTCTCTTCTCACATACATGATTGC 8851 Query 34723 TCATGTC 34729 ||||||| Sbjct 8852 TCATGTC 8858 Score = 95.1 bits (104), Expect = 1e-14 Identities = 97/127 (76%), Gaps = 0/127 (0%) Strand=Plus/Minus Query 6616 GACATGAGCGATCATGTACGTGAGCAGAGCGTAACTAGCAATGTTGAACGGCACCCCTAA 6675 ||||||||| |||||||| ||||| |||| || ||||||||||| || || || | Sbjct 8858 GACATGAGCAATCATGTATGTGAGAAGAGAATACGATGCAATGTTGAATGGAACTCCAAG 8799 Query 6676 CCCCATGTCTCCCGATCGTTGATAGAGCTGGCAGGACAGCTCCCCATTCGCGACGTAGAA 6735 |||||||| | || |||||||| | |||||||| |||||||| ||| | || || || Sbjct 8798 ACCCATGTCAGCAGAGCGTTGATACATTTGGCAGGATAGCTCCCCGTTCTCAACATAAAA 8739 Query 6736 TTGGCAG 6742 ||| || Sbjct 8738 CTGGAAG 8732 >seq2383 Length=86320 Score = 84.2 bits (92), Expect = 2e-11 Identities = 94/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 34603 CTGCCAATTCTACGTCGCGAATGGGGAGCTGTCCTGCCAGCTCTATCAACGATCGGGAGA 34662 || ||| || || || | ||| | |||||| |||||||| | |||||||| || | || Sbjct 75099 CTTCCAGTTTTATGTTGAGAACGAGGAGCTATCCTGCCAAATGTATCAACGCTCTGCTGA 75158 Query 34663 CATGGGGTTAGGGGTGCCGTTCAACATTGCTAGTTACGCTCTGCTCACGTACATGATCGC 34722 |||||| | || || || ||||||||||| || | || |||||||||||||| || Sbjct 75159 CATGGGTCTTGGAGTTCCATTCAACATTGCATCATATTCGCTTCTCACGTACATGATTGC 75218 Query 34723 TCATGT 34728 ||| || Sbjct 75219 TCAAGT 75224 Score = 84.2 bits (92), Expect = 2e-11 Identities = 94/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 6617 ACATGAGCGATCATGTACGTGAGCAGAGCGTAACTAGCAATGTTGAACGGCACCCCTAAC 6676 || ||||| |||||||||||||| || | || ||||||||||| || || || | Sbjct 75224 ACTTGAGCAATCATGTACGTGAGAAGCGAATATGATGCAATGTTGAATGGAACTCCAAGA 75165 Query 6677 CCCATGTCTCCCGATCGTTGATAGAGCTGGCAGGACAGCTCCCCATTCGCGACGTAGAAT 6736 |||||||| | || |||||||| | |||||||| |||||| | ||| | || || || Sbjct 75164 CCCATGTCAGCAGAGCGTTGATACATTTGGCAGGATAGCTCCTCGTTCTCAACATAAAAC 75105 Query 6737 TGGCAG 6742 ||| || Sbjct 75104 TGGAAG 75099 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448184609663760