Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eragrostis_20tef_20[genbank_20GCA_5F000970635.1_202015-04-08] 13,883 sequences; 607,317,615 total letters Query= NC_029304.1 Length=111246 Score E Sequences producing significant alignments: (Bits) Value seq3499 84.2 2e-11 seq654 84.2 2e-11 >seq3499 Length=58236 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||| ||||||||||| || || || || || ||| || | || || || | | Sbjct 10483 ATGCAGATTTTTGTGAAGACCCTGACCGGCAAGACTATCACTCTCGAGGTGGAGTCCTCT 10424 Query 27850 GACG--ATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 ||| || ||||| ||||| ||| || ||||| |||||| ||||| ||| | Sbjct 10423 GACACAATTGACAAT--GTCAAGGCAAAGATCCAGGACAAGGAAGGTATTCCGCCGGACC 10366 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 |||| || | || ||||| || || || | || || | | | | | || | ||||||| Sbjct 10365 AGCAGCGACTTATCTTTGCTGGCAAGCAGCTCGAGGATGGAAGGACCCTGGCTGATTACA 10306 Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 ||||||| || ||| ||| ||||| | || ||||| ||||||| || Sbjct 10305 ACATCCAGAAGGAGTCCACCCTGCATCTTGTCCTGCGTCTGCGTGGTGG 10257 >seq654 Length=182673 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||| ||||||||||| || || || || || || || |||| || || | | Sbjct 9931 ATGCAGATTTTTGTGAAGACCCTCACCGGCAAGACCATCACCCTTGAGGTGGAGTCCTCT 9872 Query 27850 GA--CGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 || | || ||||| ||||| ||| || ||||| |||||| ||||| ||| | Sbjct 9871 GATACAATCGACAAT--GTCAAGGCAAAGATCCAGGACAAGGAAGGTATTCCGCCGGACC 9814 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 |||| || | || ||||| || || || | || || | | | | | || | ||||||| Sbjct 9813 AGCAGCGACTTATCTTTGCTGGCAAGCAGCTCGAGGATGGAAGGACCCTGGCTGATTACA 9754 Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 ||||||| || ||| ||| ||||| | || ||||| ||||||| || Sbjct 9753 ACATCCAGAAGGAGTCCACCCTGCATCTTGTCCTGCGTCTGCGTGGTGG 9705 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||| ||||||||||| || || || || || || || |||| || || | | Sbjct 10159 ATGCAGATTTTTGTGAAGACCCTCACCGGCAAGACCATCACCCTTGAGGTGGAGTCCTCT 10100 Query 27850 GA--CGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 || | || ||||| ||||| ||| || ||||| |||||| ||||| ||| | Sbjct 10099 GATACAATCGACAAT--GTCAAGGCAAAGATCCAGGACAAGGAAGGTATTCCGCCGGACC 10042 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 |||| || | || ||||| || || || | || || | | | | | || | ||||||| Sbjct 10041 AGCAGCGACTTATCTTTGCTGGCAAGCAGCTCGAGGATGGAAGGACCCTGGCTGATTACA 9982 Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 ||||||| || ||| ||| ||||| | || ||||| ||||||| || Sbjct 9981 ACATCCAGAAGGAGTCCACCCTGCATCTTGTCCTGCGTCTGCGTGGTGG 9933 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||| ||||||||||| || || || || || ||| || | || || || | | Sbjct 10615 ATGCAGATTTTTGTGAAGACCCTGACCGGCAAGACTATCACTCTCGAGGTGGAGTCCTCT 10556 Query 27850 GACG--ATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 ||| || ||||| ||||| ||| || ||||| |||||| ||||| ||| | Sbjct 10555 GACACAATTGACAAT--GTCAAGGCAAAGATCCAGGACAAGGAAGGTATTCCGCCGGACC 10498 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 |||| || | || ||||| || || || | || || | | | | | || | ||||||| Sbjct 10497 AGCAGCGACTTATCTTTGCTGGCAAGCAGCTCGAGGATGGAAGGACCCTGGCTGATTACA 10438 Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 ||||||| || ||| ||| ||||| | || ||||| ||||||| || Sbjct 10437 ACATCCAGAAGGAGTCCACCCTGCATCTTGTCCTGCGTCTGCGTGGTGG 10389 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 355802188415541