Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eragrostis_20tef_20[genbank_20GCA_5F000970635.1_202015-04-08] 13,883 sequences; 607,317,615 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq3014 100 4e-16 seq737 98.7 1e-15 seq1442 86.0 9e-12 seq837 84.2 3e-11 >seq3014 Length=68818 Score = 100 bits (110), Expect = 4e-16 Identities = 161/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 78398 AGTTCCTGCATTAAATAATGTCGGAGATGCATGCGTAAACCATTTTTCAGAAAGTAGATT 78457 ||| || ||||| || | ||| || || ||||| |||||||| | ||| | |||| Sbjct 3913 AGTGCCGGCATTGAAAAGTGTTGGTGAAGCATGTGTAAACCAGCGCTGAGACATCAGATG 3972 Query 78458 GTATGTTTCAATAGCTGATTCTATGTCC-CATTGATGAATTCCTACCGCTACACGCATCA 78516 |||||||| ||||| ||||| ||||| | ||| || || || || | || | ||| | Sbjct 3973 GTATGTTTTGATAGCGGATTCAATGTCATCCTTG-TGTATACCCACTGAAACTCTCATTA 4031 Query 78517 ACATATGCTGAGGTCTTTCAACCGTCTTATTATTTATTTTCAACAAGTATGATTTTTCCA 78576 ||| ||||| ||||||||||| ||| | | ||||| | ||| || | |||| Sbjct 4032 GCATGTGCTGTGGTCTTTCAACAACCTTCCCACCAAGCTTCAAGAGGTAAGACCTCTCCA 4091 Query 78577 AAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCTCTCGTAAATAAT 78625 ||| || || ||||| |||| || ||||| || ||||||||||| Sbjct 4092 GAGTCTTGAATCCAAAGTAGTCATAGTCGAAGTCCCTATCGTAAATAAT 4140 Score = 87.8 bits (96), Expect = 2e-12 Identities = 152/221 (69%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 78159 CCTCCCTGATCTATATATCTGGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCG 78218 || || ||||| | ||| | || || | ||| | || | |||||| |||| || || Sbjct 3591 CCGCCTTGATCAACATAACGTGCAGTATCATTGAAGACACGCAACATAGGAACTATCCCA 3650 Query 78219 TTAGATGTTCCATTTGTTCCAGAAATATAACTTCCACTTGCGCGAATATTACTAATGGAT 78278 || || |||||||||||||| |||||||| ||| | || |||||||| || || Sbjct 3651 TTTGAGGTTCCATTTGTTCCTCGGATATAACTGCCAGTAGCTCGAATATTGTGAACTGAG 3710 Query 78279 ATCCCTATTCCTCCTGCCATCTTAGATATTAGAGCGCAACGTTTCAATGTATCGTAGATA 78338 | || ||||| || || || ||| | || || |||| ||||| ||||| Sbjct 3711 ACACCAATTCCCCCAGCAGATTTGCTTATGACTGCACATTCCTTCAGAGTATCATAGATT 3770 Query 78339 CCCTCTATACTGTCATCCATCATGTTAAGAAGAAAACAGCT 78379 ||||| || |||||||| ||||| || || |||||||| Sbjct 3771 CCCTCAATGCTGTCATCTTTCATGCAAATGAGGAAACAGCT 3811 >seq737 Length=174138 Score = 98.7 bits (108), Expect = 1e-15 Identities = 158/226 (70%), Gaps = 6/226 (3%) Strand=Plus/Minus Query 78158 ACCTCCCTGATCTATATATCTGGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 78217 ||| || ||||| | ||| | ||| || | ||| |||| | | ||| |||| ||| || Sbjct 54297 ACCACCTTGATCAACATAACGGGCAGTATCATTGAAAACGCGTAGCATGGGAACAATTCC 54238 Query 78218 GTTAGATGTTCCATTTGTTCCAGAAATATAACTTCCACTTGCGCGAATATTACTAATGGA 78277 || || || ||||||||||| ||||||||| || | || |||||||| ||| || Sbjct 54237 ATTGGAAGTCCCATTTGTTCCTCGAATATAACTCCCTGTAGCTCGAATATTGTGAATTGA 54178 Query 78278 TATCCCTATTCCTCCTGCCATCTTAGATATTAGAGCGCAACGTTTCAA---TGTATCGTA 78334 || || |||||||| || | || ||| ||| || || ||| ||||| || Sbjct 54177 GATACCGATTCCTCCAGCAGTTTT---GCTTATAGCAGCACATTCCAAAAGAGTATCATA 54121 Query 78335 GATACCCTCTATACTGTCATCCATCATGTTAAGAAGAAAACAGCTA 78380 || ||||| ||||||||||| ||||| | ||| || |||||| Sbjct 54120 AATTCCCTCAATACTGTCATCTTTCATGCAGATAAGGAAGCAGCTA 54075 >seq1442 Length=121472 Score = 86.0 bits (94), Expect = 9e-12 Identities = 158/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 78398 AGTTCCTGCATTAAATAATGTCGGAGATGCATGCGTAAACCATTTTTCAGAAAGTAGATT 78457 ||| || ||||| || | || || || ||||| |||||||| | ||| | || | Sbjct 112234 AGTGCCGGCATTGAAAAGAGTTGGTGAAGCATGTGTAAACCAGCGCTGAGACATCAGGTG 112175 Query 78458 GTATGTTTCAATAGCTGATTCTATGTCC-CATTGATGAATTCCTACCGCTACACGCATCA 78516 |||||||| ||||| | ||| ||||| | ||| || || || || | || | ||| | Sbjct 112174 GTATGTTTTGATAGCGGCTTCAATGTCATCCTTG-TGTATACCCACTGAAACTCTCATTA 112116 Query 78517 ACATATGCTGAGGTCTTTCAACCGTCTTATTATTTATTTTCAACAAGTATGATTTTTCCA 78576 ||||||||| ||||||||||| ||| | | ||||| | ||| || | |||| Sbjct 112115 GCATATGCTGTGGTCTTTCAACAACCTTCCCACCAAGCTTCAAGAGGTAAGACCTCTCCA 112056 Query 78577 AAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCTCTCGTAAATAAT 78625 ||| || || ||||| |||| || ||||| || |||||||| || Sbjct 112055 GAGTCTTGAACCCAAAGTAGTCATAGTCGAAGTCCCTATCGTAAATGAT 112007 >seq837 Length=163444 Score = 84.2 bits (92), Expect = 3e-11 Identities = 155/227 (68%), Gaps = 8/227 (4%) Strand=Plus/Plus Query 78158 ACCTCCCTGATCTATATATCTGGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 78217 ||| || ||||| | ||| | ||| || | ||| |||| | | ||| |||| ||| || Sbjct 144441 ACCACCTTGATCAACATAACGGGCAGTATCATTGAAAACGCGTAGCATGGGAACAATTCC 144500 Query 78218 GTTAGATGTTCCATTTGTTCCAGAAATATAACTTCCACTTGCGCGAATATTACTAATGGA 78277 || || || ||||||||||| ||| ||||| || | || |||| ||| ||| || Sbjct 144501 ATTGGAAGTCCCATTTGTTCCTCGAATGTAACTCCCGGTAGCTCGAACATTGTGAATTGA 144560 Query 78278 TATCCCTATTCCTCCTGCCATCTTAGATATTAGAGCGCAACGTTTC----AATGTATCGT 78333 || || |||||||| || | || ||| ||| || ||| | ||||| | Sbjct 144561 GATACCGATTCCTCCAGCAGTTTTGCTTATAGCAGCACA----TTCGGAAAGAGTATCAT 144616 Query 78334 AGATACCCTCTATACTGTCATCCATCATGTTAAGAAGAAAACAGCTA 78380 | || ||||| ||||||||||| ||||| | ||| || |||||| Sbjct 144617 ATATTCCCTCAATACTGTCATCTTTCATGCAGATAAGGAAGCAGCTA 144663 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694548248913120