Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eragrostis_20tef_20[genbank_20GCA_5F000970635.1_202015-04-08] 13,883 sequences; 607,317,615 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq737 98.7 1e-15 seq3014 84.2 3e-11 >seq737 Length=174138 Score = 98.7 bits (108), Expect = 1e-15 Identities = 158/226 (70%), Gaps = 6/226 (3%) Strand=Plus/Minus Query 76753 ACCTCCCTGATCTATATATCTGGCAGTGTTATTATAAACTCTCAACATTGGAATAATGCC 76812 ||| || ||||| | ||| | |||||| | ||| |||| | | ||| |||| ||| || Sbjct 54297 ACCACCTTGATCAACATAACGGGCAGTATCATTGAAAACGCGTAGCATGGGAACAATTCC 54238 Query 76813 GTTAGATGTACCATTTGTTCCAGAAATATAACTTCCACATGCACGAATATTACTAATAGA 76872 || || || ||||||||||| ||||||||| || || |||||||| ||| || Sbjct 54237 ATTGGAAGTCCCATTTGTTCCTCGAATATAACTCCCTGTAGCTCGAATATTGTGAATTGA 54178 Query 76873 TAGGCCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAGCGTTTCAA---TGTGTCATA 76929 | || |||||||| || |||| | ||| |||| | || ||| || ||||| Sbjct 54177 GATACCGATTCCTCCAGCAGTTTT---GCTTATAGCAGCACATTCCAAAAGAGTATCATA 54121 Query 76930 GATGCCCTCTATACTATCATCCATCATGTTAAGAAGAAAACAGCTA 76975 || ||||| ||||| ||||| ||||| | ||| || |||||| Sbjct 54120 AATTCCCTCAATACTGTCATCTTTCATGCAGATAAGGAAGCAGCTA 54075 >seq3014 Length=68818 Score = 84.2 bits (92), Expect = 3e-11 Identities = 151/221 (68%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 76754 CCTCCCTGATCTATATATCTGGCAGTGTTATTATAAACTCTCAACATTGGAATAATGCCG 76813 || || ||||| | ||| | ||||| | ||| | || | |||||| |||| || || Sbjct 3591 CCGCCTTGATCAACATAACGTGCAGTATCATTGAAGACACGCAACATAGGAACTATCCCA 3650 Query 76814 TTAGATGTACCATTTGTTCCAGAAATATAACTTCCACATGCACGAATATTACTAATAGAT 76873 || || || ||||||||||| |||||||| ||| || |||||||| || || Sbjct 3651 TTTGAGGTTCCATTTGTTCCTCGGATATAACTGCCAGTAGCTCGAATATTGTGAACTGAG 3710 Query 76874 AGGCCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAGCGTTTCAATGTGTCATAGATG 76933 | || ||||| || || ||| || | ||||| |||| || |||||||| Sbjct 3711 ACACCAATTCCCCCAGCAGATTTGCTTATGACTGCACATTCCTTCAGAGTATCATAGATT 3770 Query 76934 CCCTCTATACTATCATCCATCATGTTAAGAAGAAAACAGCT 76974 ||||| || || ||||| ||||| || || |||||||| Sbjct 3771 CCCTCAATGCTGTCATCTTTCATGCAAATGAGGAAACAGCT 3811 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712810679146560