Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eragrostis_20tef_20[genbank_20GCA_5F000970635.1_202015-04-08] 13,883 sequences; 607,317,615 total letters Query= NC_031056.1 Length=157501 Score E Sequences producing significant alignments: (Bits) Value seq9627 217 1e-51 seq10635 179 4e-40 >seq9627 Length=3127 Score = 217 bits (240), Expect = 1e-51 Identities = 248/333 (74%), Gaps = 15/333 (5%) Strand=Plus/Minus Query 30319 AACTACCGCTTCTGCAATCAATTGTACGAACATAGATTTACCCATACCTTTGTGGCCGCT 30378 ||| || ||||||||||| | ||| || ||||||||||||||||| ||||||| || || Sbjct 631 AACAACTGCTTCTGCAATAAGTTGAACAAACATAGATTTACCCATTCCTTTGTTACCACT 572 Query 30379 TAGAATGATCCCTAGACTACGCTCGAACTTGTCATACGATTTTAGTACCTTTCCAATCTT 30438 | || | |||| ||||| || || || ||||| ||||||| ||| || ||| || Sbjct 571 CAAGATAAGACCTAAGCTACGTTCAAATTTTTCATATGATTTTAATACTTTATTAATTTT 512 Query 30439 CTCTGCGTGGCTACCGTAAATCTTCTCTTCTTTTGATACAAAGTTATCCATCTTTTCTAA 30498 |||| ||| || || |||||||| |||| ||||| |||||||||| ||||| ||||| Sbjct 511 TTCTGGGTGACTTCCATAAATCTTTGCTTCCGTTGATTCAAAGTTATCAATCTTCTCTAA 452 Query 30499 AGAGAATCCTTGCATTGGGTGGAAATCTACCTTATATGTAGCAGCAGGTAATTCATCGTA 30558 |||||| ||| |||| || ||||||||||| |||| || || || Sbjct 451 AGAGAAACCT-------------GATCT-TGTTGTATGTAGCAGCTGGTAGTTTGTCATA 406 Query 30559 AGTTTTTAAGTCATCTCCGTAGATTTTAAATGTGCTTCCAAAGTTTACAATTTTCATAAT 30618 ||||||||||||||| ||||| |||||| | || ||||| ||||| | ||||||||| | Sbjct 405 AGTTTTTAAGTCATCACCGTAAATTTTATAAGTACTTCCGAAGTTAATAATTTTCAT-TT 347 Query 30619 TAATTATCTCCCTTTTATATGGttttttttATT 30651 || | |||| |||| | | ||| ||||| || Sbjct 346 TATATTGCTCCTTTTTCTCTCGTTGTTTTTTTT 314 Score = 214 bits (236), Expect = 2e-50 Identities = 174/211 (82%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 30034 TGGGTAGTCGAAACGAATATGGTAATGGAATCGACCAGGACGACTTAACATAAACTCGTT 30093 ||| || || || || |||||||||||||||||||||||||| |||||||||||||| || Sbjct 881 TGGATAATCAAATCGGATATGGTAATGGAATCGACCAGGACGGCTTAACATAAACTCATT 822 Query 30094 CACTCTGTGCAGGTCGTTGACTGTAATAGCGTACATACGTTTCTTCTGAGACGTACCATC 30153 || | | || ||||| || ||||| || || ||||||||||||||||| |||||||| Sbjct 821 TACCTTATTAAGATCGTTTACCGTAATCGCATAGATACGTTTCTTCTGAGAAGTACCATC 762 Query 30154 AAATAACCCTAGTAAACTATCTTGCTTCTCTGCTTTATCGTCACGAGGGTTGAACATCTT 30213 ||||||||| ||||| | || || || ||||||| || | |||||| ||||||||||| Sbjct 761 AAATAACCCCAGTAAGTTTTCCTGTTTTTCTGCTTCTTCATTACGAGGATTGAACATCTT 702 Query 30214 CTCAAACTCATCGAATACGATTAATGCTTCT 30244 ||||||||||| || | |||||||||||| Sbjct 701 TTCAAACTCATCCAAGATAATTAATGCTTCT 671 >seq10635 Length=1693 Score = 179 bits (198), Expect = 4e-40 Identities = 418/627 (67%), Gaps = 34/627 (5%) Strand=Plus/Plus Query 78070 TTGATAGCCATTAACATCCCATTAATTTTGTTATAATCGGGTTTCTCAGGCAGCTTCGAG 78129 |||||| ||||||||||| ||| || |||| |||||| | ||| | || |||| || Sbjct 696 TTGATATCCATTAACATCTTATTGATCTTGTCATAATCAGCTTTTGCCGGAAGCTCTGAT 755 Query 78130 TGTTCGTGCGCTAACTG-TAGTTTTTCATCGTAATCTGCAACAAGTGCTAGTGCCTGTTC 78188 | || | ||| ||| || || | ||||| | |||| | | ||| || | ||| Sbjct 756 TTCTCATAGGCTG-CTGCTAATTCATTGTCGTACATTTCAACCATTTCTAAAGCTTCTTC 814 Query 78189 ACGAGTGTAATCTCCATTTCGGCAACCTAGTAAGAAGT-CACGTTCAGGACGGTATGTAC 78247 |||||| | ||||| || ||| ||| || ||||| | || | |||||| || |||| Sbjct 815 GAAAGTGTATTTACCATTACGACAATCTAATA-GAAGTTCTCGGTTAGGACGATACGTAC 873 Query 78248 TGTAATCACCTGTGTTTAAGATTTCGATTGCAGATAACTGTAATCTCACACCTTGCATAA 78307 |||||| |||||| | |||||||| ||||| | |||||| | || ||||||| Sbjct 874 TGTAATTACCTGTCTCCAAGATTTCTGTTGCACTTGTTAGTAATCGGATACTGTGCATAA 933 Query 78308 AGTTCTTAGTATCGTAACCAAACTCCTCGACCAACTCTTGGCGACCTGCCCCGTTCTTGA 78367 || ||| |||||||| ||| | ||| || || | | |||| Sbjct 934 AGAACTTTGTATCGTAGCCATGAGCACCGATTAAGTCACGTC----TGCC---------- 979 Query 78368 TTTTGTTCGTTAAGGATCGTGTGTAGCCACCAAACTTCGTGA--TGATTTGTTTTGACAG 78425 ||||| || | || ||||| || ||| | | || | |||||| | Sbjct 980 ---TGTTCCTT---------GCATATCCACCGAA--TCGGTACTTAATGTTTTTTGATAA 1025 Query 78426 GAATAGGTGTCGGTTGTCACGTAGGACTTGTCCAAGTTCAGTCAAGATGATATAGTCTTC 78485 ||||| ||| ||||| || || || |||||| ||| ||| | |||| || || || Sbjct 1026 GAATAAGTGACGGTTATCGATTAAGATTTGTCCGAGTGGAGTAACCTTGATGTAATCCTC 1085 Query 78486 TTCTCTAGCAAACAGTACCTCGATGTTATTTGGAACGCCTAGCATAGCATCTTTTACGAA 78545 | | |||| || | |||||||||||| || |||| | ||||||||||| | || || Sbjct 1086 CGGACGAACAAATAGGATCTCGATGTTATTAGGTACGCTTTGCATAGCATCTCTAACAAA 1145 Query 78546 CTTACTTACATGAATGATATTGATGTCTACGTCATCCTTCGTATTCTTGAACGTCTTACC 78605 ||| | ||||||||||| || | || || ||||||||||| || |||| | ||||| Sbjct 1146 CTTGTTCACATGAATGATGTTTACATCGACATCATCCTTCGTGTTTCTGAAGTTTTTACC 1205 Query 78606 GCCTGTGTTATTGTATTCATTGAATGTTTCTAGCCCTAGAAAGTACTCCTTAGGTGGGAT 78665 |||| | ||||| ||||| |||| || | |||| | ||||| |||||||| Sbjct 1206 ACCTGATGTGTTGTACTCATTAAATGAATCCAAACCTAAGTAATACTCAACTGGTGGGAT 1265 Query 78666 ACAAACTCCTTTGAAGTCCCAATCAGA 78692 || || || || ||||| ||| || Sbjct 1266 GCATACACCCTTATAGTCCTTATCTGA 1292 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 503787758757480