Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eragrostis_20tef_20[genbank_20GCA_5F000970635.1_202015-04-08] 13,883 sequences; 607,317,615 total letters Query= NC_031235.1 Length=194437 Score E Sequences producing significant alignments: (Bits) Value seq5025 129 7e-25 seq6788 96.9 4e-15 seq300 91.5 2e-13 seq2985 86.0 8e-12 seq1910 82.4 9e-11 >seq5025 Length=34140 Score = 129 bits (142), Expect = 7e-25 Identities = 224/326 (69%), Gaps = 0/326 (0%) Strand=Plus/Minus Query 185971 TGGATGACTGGCTTAAACGCGACCGCTTTGTCTTTGTGGGCTGGTCTGGATTACTTCTTT 186030 |||| |||||| | | | ||||| || || ||||| || ||||| | || | || | Sbjct 14218 TGGACGACTGGTTACGAAGGGACCGTTTCGTTTTTGTAGGATGGTCCAGCCTATTGCTCT 14159 Query 186031 TTCCCACTGCTTATATGGCAATTGGTGGCTGGCTTACTGGCACAACGTTTGTTACGAGCT 186090 |||| ||||||| | || | || || ||| |||| || || || ||||| || | Sbjct 14158 TTCCTTGTGCTTATTTCGCTTTAGGGGGTTGGTTTACAGGGACTACTTTTGTAACTTCTT 14099 Query 186091 GGTATACCCACGGGTTGGCGTCTTCTTACCTTGAGGGTGCTAATTTTCTCACGGCAGCAG 186150 |||||||||| || || || ||| || | || ||| ||||| | |||||||| | Sbjct 14098 GGTATACCCATGGATTAGCTAGTTCCTATTTGGAAGGTTGCAATTTCTTAACGGCAGCGG 14039 Query 186151 TGTCAACTCCTGCTGACGCTATGGGTCATTCTCTTCTTCTACTTTGGGGTCCTGAGTCTC 186210 | || || ||||| | | | | || ||| | | ||||| ||||| || || | | Sbjct 14038 TTTCCACCCCTGCCAATAGTTTAGCACACTCTTTGTTGCTACTATGGGGACCGGAAGCAC 13979 Query 186211 AAGGAGATATCATCCGCTGGTTCCAACTTGGGGGACTCTGGAATTTTGTGGCGCTCCACG 186270 |||| ||| | | || |||| ||| | || || || |||| |||||| || || || | Sbjct 13978 AAGGGGATTTTACTCGTTGGTGTCAATTAGGTGGTCTGTGGACTTTTGTTGCTCTACATG 13919 Query 186271 GAGCCTTTGCTCTCATAGGTTTCATG 186296 | || ||||| || |||||||||||| Sbjct 13918 GGGCTTTTGCACTAATAGGTTTCATG 13893 >seq6788 Length=15930 Score = 96.9 bits (106), Expect = 4e-15 Identities = 137/193 (71%), Gaps = 0/193 (0%) Strand=Plus/Minus Query 183195 CTTCTGCGAATGGATTACCAGCACTAACAACCGCCTCTATGTGGGTTGGTTTGGCACACT 183254 ||||||| | ||||| || ||||| | || || || || | || |||||||| | Sbjct 6667 CTTCTGCAACTGGATAACTAGCACCGAAAATCGTCTTTACATCGGATGGTTTGGTGTTTT 6608 Query 183255 GATGATTCCAACTCTGTTGGCAGCAACCATCTGCTTCATCGTTGCCTTCGTCGCTGCTCC 183314 |||||| || || | ||| | ||||| | || || | |||||| |||||||||| Sbjct 6607 GATGATCCCTACCTTATTGACCGCAACTTCCGTATTTATTATCGCCTTCATCGCTGCTCC 6548 Query 183315 TCCTGTGGACATCGACGGCATCCGCGAACCCGTTGCTGGGTCGCTCATGTATGGAAACAA 183374 ||| || || || || || || || || || ||| |||| || | | ||||||||||| Sbjct 6547 TCCAGTAGATATTGATGGTATTCGTGAGCCTGTTTCTGGTTCTTTACTTTATGGAAACAA 6488 Query 183375 CATCATCTCTGGT 183387 || ||||||||| Sbjct 6487 TATTATCTCTGGT 6475 >seq300 Length=244684 Score = 91.5 bits (100), Expect = 2e-13 Identities = 142/200 (71%), Gaps = 10/200 (5%) Strand=Plus/Minus Query 171000 TATATTCTTGATGCTGCTGAAGAAGCAGGATTTGATTTGAACTATTCGTGTCGTGCTGGT 171059 || || || ||||||||||| || || || | || ||| || || || || ||||| Sbjct 146224 TACATCCTCGATGCTGCTGAGGATGCTGGTGTGGAGTTGCCATACTCATGCCGCGCTGGG 146165 Query 171060 GCTTGTTCGACCTGTGCTGGGAAAATTGAGAGTGGTTCTGTTGATCAATCCGATCAATCT 171119 ||||| || ||||| ||||| ||||||||| ||| || ||||| || ||| ||| Sbjct 146164 GCTTGCTCTACCTGCGCTGGTAAAATTGAGGCTGGCGAGGTAGATCAGTCGGATGGATCC 146105 Query 171120 TTCCTTGATGATG---ATCAGATTGAATCAGGTTTCATTCTGACCTGCGTCTCATATCCT 171176 ||||| ||||||| | ||| ||| ||| | | ||||| ||||| || || || Sbjct 146104 TTCCTCGATGATGGGCAGCAGGCTGA---AGGCTATGTGCTGACATGCGTGTCGTACCC- 146049 Query 171177 ACAAG--TGATTGTGTAATC 171194 |||| ||||||||| ||| Sbjct 146048 -CAAGTCTGATTGTGTCATC 146030 >seq2985 Length=69808 Score = 86.0 bits (94), Expect = 8e-12 Identities = 141/200 (71%), Gaps = 10/200 (5%) Strand=Plus/Plus Query 171000 TATATTCTTGATGCTGCTGAAGAAGCAGGATTTGATTTGAACTATTCGTGTCGTGCTGGT 171059 || || || || |||||||| || || || | || ||| || || || || ||||| Sbjct 54249 TACATCCTCGACGCTGCTGAGGATGCTGGTGTGGAGTTGCCATACTCATGCCGCGCTGGG 54308 Query 171060 GCTTGTTCGACCTGTGCTGGGAAAATTGAGAGTGGTTCTGTTGATCAATCCGATCAATCT 171119 ||||| || ||||| ||||| ||||||||| ||| || ||||| || ||| ||| Sbjct 54309 GCTTGCTCCACCTGCGCTGGCAAAATTGAGGCTGGCGAGGTAGATCAGTCGGATGGATCC 54368 Query 171120 TTCCTTGATGATG---ATCAGATTGAATCAGGTTTCATTCTGACCTGCGTCTCATATCCT 171176 ||||||||||||| | ||| ||| ||| | | ||||| ||||| || || || Sbjct 54369 TTCCTTGATGATGGGCAGCAGGCTGA---AGGCTATGTGCTGACATGCGTGTCGTACCC- 54424 Query 171177 ACAAG--TGATTGTGTAATC 171194 |||| ||| ||||| ||| Sbjct 54425 -CAAGTCTGACTGTGTCATC 54443 >seq1910 Length=102200 Score = 82.4 bits (90), Expect = 9e-11 Identities = 134/193 (69%), Gaps = 0/193 (0%) Strand=Plus/Plus Query 185971 TGGATGACTGGCTTAAACGCGACCGCTTTGTCTTTGTGGGCTGGTCTGGATTACTTCTTT 186030 |||| |||||| | | | ||||| || || ||||| || ||||| || || | || | Sbjct 8351 TGGACGACTGGTTACGAAGGGACCGTTTCGTTTTTGTAGGATGGTCCGGCCTATTACTCT 8410 Query 186031 TTCCCACTGCTTATATGGCAATTGGTGGCTGGCTTACTGGCACAACGTTTGTTACGAGCT 186090 |||| ||||||| | || | || || ||| |||| || || || ||||| || | Sbjct 8411 TTCCTTGTGCTTATTTCGCTTTAGGGGGTTGGTTTACAGGGACTACTTTTGTAACTTCTT 8470 Query 186091 GGTATACCCACGGGTTGGCGTCTTCTTACCTTGAGGGTGCTAATTTTCTCACGGCAGCAG 186150 |||||||||| || || || ||| || | || ||| ||||| | |||||||| | Sbjct 8471 GGTATACCCATGGATTAGCTAGTTCCTATTTGGAAGGTTGCAATTTCTTAACGGCAGCGG 8530 Query 186151 TGTCAACTCCTGC 186163 | || || ||||| Sbjct 8531 TTTCCACCCCTGC 8543 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 621962447457960