Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eragrostis_20tef_20[genbank_20GCA_5F000970635.1_202015-04-08] 13,883 sequences; 607,317,615 total letters Query= NC_031242.1 Length=174307 Score E Sequences producing significant alignments: (Bits) Value seq5025 205 1e-47 seq1910 136 4e-27 seq6788 120 3e-22 seq4399 98.7 1e-15 >seq5025 Length=34140 Score = 205 bits (226), Expect = 1e-47 Identities = 243/326 (75%), Gaps = 4/326 (1%) Strand=Plus/Minus Query 165165 GACGACTGGCTTAAAAGAGACCGTTTCGTTTTTGTTGGCTGGTCTGGACTTCTTCTTTTT 165224 ||||||||| | ||| ||||||||||||||||| || ||||| | || | || ||| Sbjct 14216 GACGACTGGTTACGAAGGGACCGTTTCGTTTTTGTAGGATGGTCCAGCCTATTGCTCTTT 14157 Query 165225 CCCACTGCTTATCTTGCTCTTGGGGGTTGGCTTACTGGGACTACTTTCGTCACGAGTTGG 165284 || ||||||| | ||| | ||||||||| |||| ||||||||||| || || |||| Sbjct 14156 CCTTGTGCTTATTTCGCTTTAGGGGGTTGGTTTACAGGGACTACTTTTGTAACTTCTTGG 14097 Query 165285 TATACTCACGGACTTGCGAGTTCCTATCTTGAGGGT-GCAAACTTTCTTA-CTGCGGCAG 165342 ||||| || ||| | || ||||||||| | || ||| |||| ||||||| | || || | Sbjct 14096 TATACCCATGGATTAGCTAGTTCCTATTTGGAAGGTTGCAA--TTTCTTAACGGCAGCGG 14039 Query 165343 TTTCTACTCCAGCAGACGCTATGGGTCATTCTCTTCTGCTTCTATGGGGTCCTGAGTCTC 165402 |||| || || || | | | | || ||| | |||| |||||||| || || | | Sbjct 14038 TTTCCACCCCTGCCAATAGTTTAGCACACTCTTTGTTGCTACTATGGGGACCGGAAGCAC 13979 Query 165403 AAGGGGACTTCATCCGCTGGTGCCAACTTGGGGGACTCTGGACTTTTGTGGCGCTCCACG 165462 ||||||| || | || ||||| ||| | || || || ||||||||||| || || || | Sbjct 13978 AAGGGGATTTTACTCGTTGGTGTCAATTAGGTGGTCTGTGGACTTTTGTTGCTCTACATG 13919 Query 165463 GAGCCTTTGCACTTATAGGTTTCATG 165488 | || |||||||| |||||||||||| Sbjct 13918 GGGCTTTTGCACTAATAGGTTTCATG 13893 >seq1910 Length=102200 Score = 136 bits (150), Expect = 4e-27 Identities = 148/193 (77%), Gaps = 4/193 (2%) Strand=Plus/Plus Query 165165 GACGACTGGCTTAAAAGAGACCGTTTCGTTTTTGTTGGCTGGTCTGGACTTCTTCTTTTT 165224 ||||||||| | ||| ||||||||||||||||| || ||||| || || | || ||| Sbjct 8353 GACGACTGGTTACGAAGGGACCGTTTCGTTTTTGTAGGATGGTCCGGCCTATTACTCTTT 8412 Query 165225 CCCACTGCTTATCTTGCTCTTGGGGGTTGGCTTACTGGGACTACTTTCGTCACGAGTTGG 165284 || ||||||| | ||| | ||||||||| |||| ||||||||||| || || |||| Sbjct 8413 CCTTGTGCTTATTTCGCTTTAGGGGGTTGGTTTACAGGGACTACTTTTGTAACTTCTTGG 8472 Query 165285 TATACTCACGGACTTGCGAGTTCCTATCTTG-AGGGTGCAAACTTTCTT-ACTGCGGCAG 165342 ||||| || ||| | || ||||||||| | | ||| ||||| |||||| || || || | Sbjct 8473 TATACCCATGGATTAGCTAGTTCCTATTTGGAAGGTTGCAA--TTTCTTAACGGCAGCGG 8530 Query 165343 TTTCTACTCCAGC 165355 |||| || || || Sbjct 8531 TTTCCACCCCTGC 8543 >seq6788 Length=15930 Score = 120 bits (132), Expect = 3e-22 Identities = 144/193 (75%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 163928 TTCTGTAACTGGGTAACTTCAACCGACAATCGTTTGTATGTCGGTTGGTTCGGCGTCCTG 163987 ||||| |||||| ||||| ||||| |||||| | || |||| ||||| || || || Sbjct 6666 TTCTGCAACTGGATAACTAGCACCGAAAATCGTCTTTACATCGGATGGTTTGGTGTTTTG 6607 Query 163988 ATGATTCCCTGCCTGCTGG-CAGCGACTACATGTTTCATCATCGCCTTCATCGGTGCTCC 164046 ||||| |||| ||| | | | || ||| | || || ||||||||||||| |||||| Sbjct 6606 ATGAT-CCCTACCTTATTGACCGCAACTTCCGTATTTATTATCGCCTTCATCGCTGCTCC 6548 Query 164047 TCCTGTGGACATCGATGGCATCCGCGAACCCGTCGCTGGTTCGCTCATGTATGGAAACAA 164106 ||| || || || ||||| || || || || || ||||||| | | ||||||||||| Sbjct 6547 TCCAGTAGATATTGATGGTATTCGTGAGCCTGTTTCTGGTTCTTTACTTTATGGAAACAA 6488 Query 164107 CATCATCTCTGGT 164119 || ||||||||| Sbjct 6487 TATTATCTCTGGT 6475 >seq4399 Length=42927 Score = 98.7 bits (108), Expect = 1e-15 Identities = 81/99 (82%), Gaps = 0/99 (0%) Strand=Plus/Plus Query 165841 ATTCCATGGTCACTGCTAACCGTTTCTGGTCTCAGATTTTTGGTATTGCTTTCAGCAATA 165900 |||| ||||| ||||||||||| || ||||| || || |||||| ||||||| ||||| Sbjct 11125 ATTCAATGGTTACTGCTAACCGCTTTTGGTCCCAAATCTTTGGTGTTGCTTTTTCCAATA 11184 Query 165901 AGCGTTGGCTTCACTTCTTTATGCTCTTTGTTCCTGTCA 165939 | |||||| | || ||||||||||| ||||| || |||| Sbjct 11185 AACGTTGGTTACATTTCTTTATGCTATTTGTACCCGTCA 11223 Score = 84.2 bits (92), Expect = 2e-11 Identities = 113/159 (71%), Gaps = 9/159 (6%) Strand=Plus/Minus Query 164021 TTCATCATCGCCTTCATCGGTGCTCCTCCTGTGGACATCGATGGCATCCGCGAACCCGTC 164080 || || ||||||||||||| |||||||| || || || | || || || Sbjct 12195 TTTATTATCGCCTTCATCGCTGCTCCTCAAGTAGA---------TATTTGTGAGCCTGTT 12145 Query 164081 GCTGGTTCGCTCATGTATGGAAACAACATCATCTCTGGTGCTGTTATCCCTTCTTCTAAC 164140 |||||||| | | | ||||||||| || |||||||||| ||||| ||| ||||| Sbjct 12144 TCTGGTTCGTTACTATGTGGAAACAATATTATCTCTGGTGTCGTTATTCCTACTTCTGCG 12085 Query 164141 GCTATCGGTCTGCACTTCTACCCCATCTGGGAAGCAGCA 164179 || ||||| | || || ||||| || |||||||| ||| Sbjct 12084 GCGATCGGATTACATTTTTACCCAATATGGGAAGCTGCA 12046 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 557557626049560