Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eragrostis_20tef_20[genbank_20GCA_5F000970635.1_202015-04-08] 13,883 sequences; 607,317,615 total letters Query= NC_031935.1 Length=186386 Score E Sequences producing significant alignments: (Bits) Value seq5025 127 2e-24 seq6788 111 2e-19 seq4399 98.7 1e-15 seq1910 86.0 7e-12 >seq5025 Length=34140 Score = 127 bits (140), Expect = 2e-24 Identities = 232/337 (69%), Gaps = 2/337 (1%) Strand=Plus/Minus Query 178839 TTTGATGTACTCGATGACTGGCTTAAGC-GTGATCGGTTCGTTTTTGTTGGTTGGTCAGG 178897 |||||| | | || |||||| ||| | | || || ||||||||||| || ||||| | Sbjct 14228 TTTGATATTATGGACGACTGG-TTACGAAGGGACCGTTTCGTTTTTGTAGGATGGTCCAG 14170 Query 178898 TCTTCTTCTGTTCCCTACTGCTTACATGGCACTGGGCGGTTGGCTCACGGGCACAACATT 178957 || | || || ||| |||||| | || | || |||||| | || || || || || Sbjct 14169 CCTATTGCTCTTTCCTTGTGCTTATTTCGCTTTAGGGGGTTGGTTTACAGGGACTACTTT 14110 Query 178958 CGTCACCTCGTGGTATACTCACGGGATTGCTTCTTCGTATCTTGAGGGATGTAATTTCCT 179017 || || || |||||||| || || | ||| ||| ||| | || || || |||||| | Sbjct 14109 TGTAACTTCTTGGTATACCCATGGATTAGCTAGTTCCTATTTGGAAGGTTGCAATTTCTT 14050 Query 179018 TACTGCTGCTGTATCAACTCCTGCTGACGCTCTCGGACATTCCCTACTTCTTCTATGGGG 179077 || || || || || || ||||| | | | | ||| || | | || |||||||| Sbjct 14049 AACGGCAGCGGTTTCCACCCCTGCCAATAGTTTAGCACACTCTTTGTTGCTACTATGGGG 13990 Query 179078 TCCAGAAGCTCAGGGAGATTTCGTCCGCTGGCTCCAACTTGGGGGACTATGGCCTTTTGT 179137 || ||||| || || ||||| || ||| ||| | || || || ||| ||||||| Sbjct 13989 ACCGGAAGCACAAGGGGATTTTACTCGTTGGTGTCAATTAGGTGGTCTGTGGACTTTTGT 13930 Query 179138 GGCGCTCCACGGTGCCTTCGCTCTCATAGGTTTCATG 179174 || || || || || || || || |||||||||||| Sbjct 13929 TGCTCTACATGGGGCTTTTGCACTAATAGGTTTCATG 13893 >seq6788 Length=15930 Score = 111 bits (122), Expect = 2e-19 Identities = 142/193 (74%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 177598 TTCTGTAACTGGGTAACCTCCACCAACAATCGTCTGTATGTCGGTTGGTTCGGTGTCCTG 177657 ||||| |||||| |||| |||| | |||||||| || |||| ||||| ||||| || Sbjct 6666 TTCTGCAACTGGATAACTAGCACCGAAAATCGTCTTTACATCGGATGGTTTGGTGTTTTG 6607 Query 177658 ATGATCCCTACGCTGCTCGCTGCTGCTATCTGT-TTCATCGTCGCTTTCGTCGCTGCTCC 177716 ||||||||||| | | | || || || || || || |||| ||| |||||||||| Sbjct 6606 ATGATCCCTACCTTATTGACCGCAACT-TCCGTATTTATTATCGCCTTCATCGCTGCTCC 6548 Query 177717 TCCTGTGGACATCGACGGCATCCGTGAACCCGTCGCTGGTTCCCTGATGTATGGCAACAA 177776 ||| || || || || || || ||||| || || ||||||| | | ||||| ||||| Sbjct 6547 TCCAGTAGATATTGATGGTATTCGTGAGCCTGTTTCTGGTTCTTTACTTTATGGAAACAA 6488 Query 177777 CATCATTTCTGGT 177789 || || |||||| Sbjct 6487 TATTATCTCTGGT 6475 >seq4399 Length=42927 Score = 98.7 bits (108), Expect = 1e-15 Identities = 81/99 (82%), Gaps = 0/99 (0%) Strand=Plus/Plus Query 179527 ATTCGATGGTTACTGCCAACCGTTTCTGGTCTCAGATCTTTGGTATCGCCTTCAGCAATA 179586 |||| ||||||||||| ||||| || ||||| || ||||||||| | || || ||||| Sbjct 11125 ATTCAATGGTTACTGCTAACCGCTTTTGGTCCCAAATCTTTGGTGTTGCTTTTTCCAATA 11184 Query 179587 AGCGTTGGCTACATTTCTTTATGTTGTTTGTTCCTGTCA 179625 | |||||| |||||||||||||| | ||||| || |||| Sbjct 11185 AACGTTGGTTACATTTCTTTATGCTATTTGTACCCGTCA 11223 >seq1910 Length=102200 Score = 86.0 bits (94), Expect = 7e-12 Identities = 143/204 (70%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 178839 TTTGATGTACTCGATGACTGGCTTAAGC-GTGATCGGTTCGTTTTTGTTGGTTGGTCAGG 178897 |||||| | | || |||||| ||| | | || || ||||||||||| || ||||| || Sbjct 8341 TTTGATATTATGGACGACTGG-TTACGAAGGGACCGTTTCGTTTTTGTAGGATGGTCCGG 8399 Query 178898 TCTTCTTCTGTTCCCTACTGCTTACATGGCACTGGGCGGTTGGCTCACGGGCACAACATT 178957 || | || || ||| |||||| | || | || |||||| | || || || || || Sbjct 8400 CCTATTACTCTTTCCTTGTGCTTATTTCGCTTTAGGGGGTTGGTTTACAGGGACTACTTT 8459 Query 178958 CGTCACCTCGTGGTATACTCACGGGATTGCTTCTTCGTATCTTGAGGGATGTAATTTCCT 179017 || || || |||||||| || || | ||| ||| ||| | || || || |||||| | Sbjct 8460 TGTAACTTCTTGGTATACCCATGGATTAGCTAGTTCCTATTTGGAAGGTTGCAATTTCTT 8519 Query 179018 TACTGCTGCTGTATCAACTCCTGC 179041 || || || || || || ||||| Sbjct 8520 AACGGCAGCGGTTTCCACCCCTGC 8543 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596203718339280