Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hordeum_20pubiflorum_20[genbank_20GCA_5F000582825.1_202013-08-30] 1,818,420 sequences; 1,425,274,558 total letters Query= NC_001132.2 Length=161773 Score E Sequences producing significant alignments: (Bits) Value seq78186 95.1 1e-14 >seq78186 Length=6745 Score = 95.1 bits (104), Expect = 1e-14 Identities = 283/432 (66%), Gaps = 5/432 (1%) Strand=Plus/Minus Query 16961 AGACATGCGAAATCGCAATGTAATCCCTCGTCTCTGCTGATAAGTTCGTTAGAAAATGTC 17020 || || ||||| ||||| || | |||||||| | | ||| || ||||| || || || Sbjct 896 AGGCAGGCGAAGTCGCAGTGCAGGCCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAGGTG 837 Query 17021 AACCCGGGCATCTTTCCTCGTTTCTTTAACCAAAATATCGCGGCGAACGACCCAGAAAAG 17080 | || ||||| || || ||||| | ||| || || ||| ||| || || || ||| Sbjct 836 AGGCCCGGCATGAGGCCCCGCTTCTTGAGCCAGAAGATGGCGCAGAAGGAGCCCGAGAAG 777 Query 17081 AATATACCCTCGACGGATGCAAACGCGATTAATCGTTCGGCGTACGTCGCGTCTTTGTTA 17140 || || ||||||||| | || || |||| | || |||||| | | | | || Sbjct 776 AAGATGCCCTCGACGCAGGCGAAGGCGACGATGCGCTCGGCGAAGCGCTCCCCGCCGT-- 719 Query 17141 CGAATCCATTTCTGCACCCACTCGGCTTTTTGCTTTATGCAATCCATCGTTTCTATGGCC 17200 ||| |||| | || |||| ||||| || | | | || || || ||||| Sbjct 718 CGA-TCCAGCGCAGCGCCCAGTCGGCCTTGCGGCGGACGGCCGGGATGGTGTCGATGGCG 660 Query 17201 TTAAATAATTTCTCTTTTTCCTGTAGGTCGATTATATACGTATCGATGAGTAGGCTGTAC 17260 || | || || || |||| || || || |||||||| ||| |||| Sbjct 659 CGGAAGAGGCGGTCCTTCTCGACGTCGTCGCGGATGTAGGTCTCGATGAGCAGGGAGTAC 600 Query 17261 ATTTCGGAGTGTATGTTCTCCATGGCTATCTGAAATCCGTAAAAGCATCGGGCTTCCGCT 17320 || |||||||| |||||||| ||||| ||||| || ||||| ||| | ||| || || Sbjct 599 ATCTCGGAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAGAAGGCCCTGGCCTCGGCG 540 Query 17321 ATTTGAACTTCC-ACGTAGAATCGTTCCGCTAGATTTTCGTTCACGATGCCGTCGCTCGC 17379 | || || || || | ||| | || || || ||| ||||||||||||| || Sbjct 539 ACCTGCACGTCGGACAT-GAACCTGGAGGCGAGGTTCTCGAGCACGATGCCGTCGGAGGC 481 Query 17380 GGCGAAAAACGC 17391 |||||| || || Sbjct 480 GGCGAAGAAGGC 469 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 505781659125600