Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hordeum_20pubiflorum_20[genbank_20GCA_5F000582825.1_202013-08-30] 1,818,420 sequences; 1,425,274,558 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq49623 86.0 7e-12 >seq49623 Length=10526 Score = 86.0 bits (94), Expect = 7e-12 Identities = 152/222 (68%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 54184 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 54243 ||| || ||||||| ||| | ||| || | ||| | || | ||||| |||| ||| || Sbjct 4042 TCCGCCTTGATCTACGTAACGAGCAGTATCATTGAAGACACGTAACATGGGAACAATCCC 3983 Query 54244 ATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGA 54303 |||||||| ||||| ||||| || || || ||| | |||||||| || || || Sbjct 3982 ATTGGATGTCCCATTTGTCCCTCGAATGTAACTCCCAGTAGCACGAATGTTGTGAACAGA 3923 Query 54304 TAGACCTATCCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGAT 54363 | ||| || || || || ||| || | || || || | ||||||||||| Sbjct 3922 GACACCAATTCCTCCAGCAGATTTGCTTATGACAGCACACTCCTTCAGAGTATCATAGAT 3863 Query 54364 GCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCT 54405 ||||| || |||||||| ||||| | || |||||||| Sbjct 3862 TCCCTCGATGCTATCATCTTTCATGCAGATAAGGAAACAGCT 3821 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 580226159601600