Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hordeum_20pubiflorum_20[genbank_20GCA_5F000582825.1_202013-08-30] 1,818,420 sequences; 1,425,274,558 total letters Query= NC_001993.1 Length=236120 Score E Sequences producing significant alignments: (Bits) Value seq752483 102 1e-16 >seq752483 Length=2742 Score = 102 bits (112), Expect = 1e-16 Identities = 165/235 (70%), Gaps = 2/235 (1%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGA-AGCAAA 124597 ||||| || ||| | |||||| |||| || || || || ||| | ||| | || ||| Sbjct 1440 ATGCAGATTTTTGTCAAGACATTAACTGGAAAGACCATTACTCTTGAGGTGGAGAGCTCC 1499 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 || || || |||| | || || || || || || || || || || || ||||| Sbjct 1500 -GACACCATCGATAATGTGAAGGCCAAGATCCAGGACAAGGAGGGAATTCCTCCAGATCA 1558 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 || |||||||| |||||||| || || | |||||| | || || || | ||||||||| Sbjct 1559 GCAGAGGCTTATCTTTGCAGGGAAGCAGCTGGAGGATGGGCGTACCTTGGCAGATTATAA 1618 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTATTAAA 124772 || ||||||||||| ||| | ||| | || | || | || |||||| || || Sbjct 1619 CATCCAAAAAGAATCCACTCTTCATCTTGTCCTGCGCCTCCGTGGTGGTCTTTAA 1673 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 738284296256000