Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hordeum_20pubiflorum_20[genbank_20GCA_5F000582825.1_202013-08-30] 1,818,420 sequences; 1,425,274,558 total letters Query= NC_002687.1 Length=335593 Score E Sequences producing significant alignments: (Bits) Value seq78186 102 2e-16 seq37709 100 6e-16 >seq78186 Length=6745 Score = 102 bits (112), Expect = 2e-16 Identities = 136/189 (72%), Gaps = 0/189 (0%) Strand=Plus/Minus Query 157258 GTACTCGGCCACTCTATTCTCAAAAAAGTTGGTCTTTCCCTGGAGAGAAATCATGTCCAT 157317 ||||||| | || | ||||| || ||||||||||| ||||| || || || | ||||| Sbjct 1179 GTACTCGCCGACGCGCTTCTCGAAGAAGTTGGTCTTGCCCTGCAGCGAGATGAGCTCCAT 1120 Query 157318 CCACTCGAATGGGTTGGCGCAGTTGTACACCTTGTCGTACCCCAGCTGGTTCAGCCAGTA 157377 ||| ||||| ||||||| | |||||||| ||||| | | |||||| | ||| | Sbjct 1119 CCAGTCGAACGGGTTGGTGGCGTTGTACAGCTTGTTGCAGCCCAGCGCCATGAGCAGGCG 1060 Query 157378 GTCCGCCACAAACTTGATGTACTCTGTCATGCTCTTCTCGCTGATACCGATGAGCGCGAC 157437 ||| || || |||| |||||||| ||||| | || | || || | ||||||| Sbjct 1059 GTCGGCGACGAACTCGATGTACTGGCTCATGAGGTCGCCGTTCATGCCCACGAGCGCGCA 1000 Query 157438 GGGAAGCGC 157446 ||| ||||| Sbjct 999 GGGGAGCGC 991 >seq37709 Length=12305 Score = 100 bits (110), Expect = 6e-16 Identities = 150/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 248808 AGATTTGGAGTACGATTTCTTTGCTTTCAAAACGCTGGAGAAATCGTATCTCCTCAAAAT 248867 ||| || || ||||||||||||| |||||| ||||| |||| || ||||| || ||| | Sbjct 6598 AGACTTTGACTACGATTTCTTTGGTTTCAAGACGCTTGAGAGGTCTTATCTACTGAAAGT 6657 Query 248868 TGATGGCAAGATCGTGGAACGAATTCAGCACATGTTGATGCGAGTGGCTGTCGGGATTCA 248927 || || ||| | |||||| || || || ||||| ||| | || |||| || || || Sbjct 6658 TGGCGGGAAGGTTGTGGAAAGACCGCAACATATGTTAATGAGGGTTTCTGTTGGAATACA 6717 Query 248928 CAAGGATGACATAGAGAGCGTGCTCGAGACGTACACCGGAATGAGTGAACGCTGGATGAC 248987 ||||||||| || ||| | || | || ||| | ||| | | |||||| | || Sbjct 6718 CAAGGATGATATTGAGTCTGCTGTCAAAACATACCACATGATGTCTCAGCGCTGGTTTAC 6777 Query 248988 ACATGCCACACCGACGCTCTTCAACGCCGGTAC 249020 ||||| | || || || ||||| || || || Sbjct 6778 TCATGCTTCCCCAACCCTTTTCAATGCTGGCAC 6810 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1048749246818560