Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hordeum_20pubiflorum_20[genbank_20GCA_5F000582825.1_202013-08-30] 1,818,420 sequences; 1,425,274,558 total letters Query= NC_003083.1 Length=118584 Score E Sequences producing significant alignments: (Bits) Value seq750497 89.7 4e-13 seq2818 84.2 2e-11 seq774391 82.4 6e-11 >seq750497 Length=14261 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158 || || || || || || |||| ||| || || || || || || ||||||||||| || Sbjct 11292 CCACCACGGAGCCTGAGCACCAAGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGCA 11351 Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218 | || || ||| || | || ||||| ||| |||| || | || || ||| ||| Sbjct 11352 AGGGTGCGACCATCCTCGAGCTGCTTGCCAGCAAAGATGAGGCGCTGCTGGTCCGGGGGA 11411 Query 18219 ACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTT 18278 | ||||||||| || || | | |||||| | ||| ||||| || ||| | Sbjct 11412 ATGCCTTCCTTGTCCTGGATCTTTGCCTTGACATTGTCAATGGTGTCCGAGGACTCAACT 11471 Query 18279 TCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 || | ||||||| | |||||||| | ||| || ||||| || ||||| Sbjct 11472 TCCAGGGTGATGGTCTTGCCGGTGAGTGTCTTCACAAAGATCTGCAT 11518 Score = 84.2 bits (92), Expect = 2e-11 Identities = 159/234 (68%), Gaps = 0/234 (0%) Strand=Plus/Plus Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158 || ||||| || || || |||| ||| ||||| || || || || ||||||||||| ||| Sbjct 11520 CCACCCCGGAGCCTGAGCACCAGGTGGAGTGTGGACTCCTTCTGGATGTTGTAGTCAGCC 11579 Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218 | || | ||| || | || ||||| || |||| || | || || ||| || Sbjct 11580 AGAGTGCGCCCATCCTCAAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGGTCCGGCGGG 11639 Query 18219 ACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTT 18278 | ||| ||||| || || | |||||| | | | |||||| || |||| Sbjct 11640 ATGCCCTCCTTGTCCTGGATCTTGGCCTTGACATTGTCGATGGTGTCAGAGGACTCGACC 11699 Query 18279 TCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCATTTTTAAA 18332 |||| ||||||| | |||||||| | || || ||||| || ||||| | |||| Sbjct 11700 TCAAGGGTGATGGTCTTGCCGGTGAGGGTCTTCACAAAGATCTGCATCTGTAAA 11753 >seq2818 Length=2550 Score = 84.2 bits (92), Expect = 2e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158 || |||| || || || |||| |||||||| || ||||| ||||||||||||||||| Sbjct 526 CCACCCCTGAGCCTCAGGACCAAATGAAGTGTCGACTCTTTCTGAATGTTGTAGTCGGCT 585 Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218 | ||| | |||||||| || || || ||| | || || ||||| || ||| || Sbjct 586 AATGTCCGTCCATCTTCCAGCTGCTTTCCAGCAAAAATTAGCCTTTGCTGGTCCGGTGGG 645 Query 18219 ACGCCTTCCTTATC 18232 | ||||||||| || Sbjct 646 ATGCCTTCCTTGTC 659 >seq774391 Length=5162 Score = 82.4 bits (90), Expect = 6e-11 Identities = 159/235 (68%), Gaps = 0/235 (0%) Strand=Plus/Minus Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158 || || || || || || |||| ||| || || || || || || ||||||||||| ||| Sbjct 5040 CCACCACGGAGCCTGAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGCC 4981 Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218 | || | ||| |||| ||| ||||| ||| |||| || | || || ||| || Sbjct 4980 AAGGTGCGGCCATCCTCCAGTTGCTTGCCAGCAAAGATGAGACGCTGCTGGTCCGGAGGG 4921 Query 18219 ACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTT 18278 | ||| |||||||| || | ||| || | ||| |||||| | ||| Sbjct 4920 ATGCCCTCCTTATCCTGGATCTTGGCCTTCACGTTGTCAATCGTGTCAGAAGACTCAACC 4861 Query 18279 TCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCATTTTTAAAC 18333 || | ||||||| | |||||||| | || || ||||| || ||||| | ||||| Sbjct 4860 TCGAGGGTGATGGTCTTGCCGGTGAGAGTCTTCACAAAGATCTGCATCTGTAAAC 4806 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 370936980642900