Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hordeum_20pubiflorum_20[genbank_20GCA_5F000582825.1_202013-08-30] 1,818,420 sequences; 1,425,274,558 total letters Query= NC_003225.3 Length=309286 Score E Sequences producing significant alignments: (Bits) Value seq3390 91.5 3e-13 >seq3390 Length=10296 Score = 91.5 bits (100), Expect = 3e-13 Identities = 85/106 (80%), Gaps = 4/106 (4%) Strand=Plus/Plus Query 35609 CAATTTTATGTGGCTAATGGAGAATTGTCGTGCCAGTTGTATCAGCG--AAGCGGAGATG 35666 || |||||||| | ||||||||||| ||||| ||| |||||||||| ||| || ||| Sbjct 29 CAGTTTTATGTCGAGAATGGAGAATTATCGTGTCAGATGTATCAGCGTTCAGCTGACATG 88 Query 35667 TCGGGTTGGGCGTGCCCTTCAATATTGCATCATACTCTCTTCTGAC 35712 ||| | || || || ||||| ||||||||||| ||||||||||| Sbjct 89 --GGGCTTGGTGTACCATTCAACATTGCATCATATTCTCTTCTGAC 132 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 966528170991100