Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hordeum_20pubiflorum_20[genbank_20GCA_5F000582825.1_202013-08-30] 1,818,420 sequences; 1,425,274,558 total letters Query= NC_004062.1 Length=119217 Score E Sequences producing significant alignments: (Bits) Value seq1743593 91.5 1e-13 seq752483 87.8 1e-12 seq8128 87.8 1e-12 >seq1743593 Length=9171 Score = 91.5 bits (100), Expect = 1e-13 Identities = 163/238 (68%), Gaps = 0/238 (0%) Strand=Plus/Plus Query 42882 GCCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGA 42941 ||| ||||| || | | ||||| |||| ||| ||| || || | || ||||| | Sbjct 1543 GCCACCACGGAGACGGAGAACCAAGTGGAGGGTGGACTCTTTCTGGATGTTATAATCAGC 1602 Query 42942 CAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGG 43001 | || || | || || | || ||||||||||| || | ||||||||| || | ||| Sbjct 1603 AAGAGTGCGCCCATCCTCAAGCTGCTTGCCGGCAAAGATGAGTCGCTGTTGGTCCGGCGG 1662 Query 43002 CACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGAC 43061 | ||| || || || |||| | ||||| || ||| |||||| || |||||| Sbjct 1663 GATACCCTCCTTATCCTGGATCTTTGCCTTGACATTGTCAATTGTGTCAGAAGACTCGAC 1722 Query 43062 GTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCATTTTCTTAATT 43119 || | || || || || ||||| || || |||||||| || ||||| | | ||||| Sbjct 1723 CTCAAGTGTGATGGTCTTGCCGGTGAGCGTCTTCACAAAGATCTGCATCTGCATAATT 1780 >seq752483 Length=2742 Score = 87.8 bits (96), Expect = 1e-12 Identities = 141/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 42907 TGGATAGTGCTCTCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCGTCCAATTGT 42966 |||| ||| |||||| || | |||||||| | ||| || || | || |||| |||| Sbjct 1186 TGGAGGGTGGACTCCTTCTGAATGTTGTAATCAGCCAAGGTGCGGCCATCTTCCAGTTGT 1127 Query 42967 TTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCGCTGATCAAC 43026 || || ||||| || | | |||||| || | || | || || || || |||| Sbjct 1126 TTCCCAGCAAAGATAAGCCTCTGTTGGTCTGGTGGGATGCCCTCCTTGTCCTGGATCTTT 1067 Query 43027 TCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACGTCTACCGTTATAGTTTTTCCGGTT 43086 | ||||| || ||| ||||| | |||||| |||| ||||| || || || || Sbjct 1066 GCCTTGACATTGTCAATGGTGTCAGAACTCTCGACCTCTAGAGTTATGGTCTTCCCAGTA 1007 Query 43087 AGAGTTTTCACAAAAATTTGCAT 43109 |||||||||||||| || ||||| Sbjct 1006 AGAGTTTTCACAAAGATCTGCAT 984 >seq8128 Length=3827 Score = 87.8 bits (96), Expect = 1e-12 Identities = 150/218 (69%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 42892 AGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGACAATGTACGT 42951 || || | ||||| ||| | ||| |||||| || | ||||||||||| | ||| || Sbjct 3281 AGCCTGAGCACCAGATGAAGGGTGGACTCCTTCTGGATATTGTAATCGGCAAGTGTCCGG 3222 Query 42952 TCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGCACACCTTCT 43011 | || || | || ||||| ||||| || | ||||| || || | ||| | || || Sbjct 3221 CCATCCTCGAGCTGCTTGCCCGCAAAGATGAGGCGCTGCTGGTCCGGCGGGATGCCCTCC 3162 Query 43012 TTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACGTCTACCGTT 43071 || || |||| | ||||| || ||| ||||||| | ||| || || | || Sbjct 3161 TTGTCCTGGATCTTTGCCTTGACATTGTCAATTGTGTCGGAGGACTCAACCTCAAGTGTG 3102 Query 43072 ATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 || || || ||||| ||||| |||||||| || ||||| Sbjct 3101 ATGGTCTTCCCGGTCAGAGTCTTCACAAAGATCTGCAT 3064 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 372917689308360