Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hordeum_20pubiflorum_20[genbank_20GCA_5F000582825.1_202013-08-30] 1,818,420 sequences; 1,425,274,558 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq78186 163 4e-35 >seq78186 Length=6745 Score = 163 bits (180), Expect = 4e-35 Identities = 578/890 (65%), Gaps = 36/890 (4%) Strand=Plus/Plus Query 124993 CCCTGTTTCCCATCAGGTATCATGACATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCT 125052 || |||| |||||| ||| | | || ||||| | ||||| ||||| |||||||| Sbjct 314 CCATGTTCCCCATCCGGTTCCCGCAGATCTGGGAGTTCTACAAGAAGGCGGTGGCCTCCT 373 Query 125053 TTTGGACGGTCGAAGAGGTCGATCTGTCCAAGGACCTGTACGATTGGGAGACTCGTTTGA 125112 | ||||| | ||| ||||| || || ||| ||| | | | ||||| || | Sbjct 374 TCTGGACCGCCGAGGAGGTGGACCTCTCCTCCGACGCGCGCCACTGGGACACCACCCT-- 431 Query 125113 CTGAAACT--GAGCGAGAGTTTATATCGCACATTTTGGCCTTCTTTGCCGGCTCCGATGG 125170 || ||| ||||| | || || || ||| | | |||||||| |||| |||||| || Sbjct 432 CTCCAACGACGAGCGCCACTTCATCTCCCACGTGCTCGCCTTCTTCGCCGCCTCCGACGG 491 Query 125171 AATCGTCAACGACAATCTGTTGACACGATTC-TCTCAAGAGTTGACCATTCCAGAGGTGT 125229 ||||| ||| || || | | ||| | || || || | | |||| Sbjct 492 CATCGTGCTCGAGAACCTCGCCTCCAGGTTCATGTCC-GACGTGCAGGTCGCCGAGGCCA 550 Query 125230 CGTGCTTTTACGGATTCCAAATCATGATTGAGAACGTGCACTCGGAAATGTACTCTACAC 125289 | ||| ||||| ||||| ||| || |||||| | ||||| || |||||||| | Sbjct 551 GGGCCTTCTACGGCTTCCAGATCGCCATCGAGAACATCCACTCCGAGATGTACTCCCTGC 610 Query 125290 TGATTGACATGTACATTCGCGATCCGCAACGT----AAACACATGCTCTTTAACGCAATC 125345 | || || | ||||| ||||| | |||| || || ||||| ||| ||| Sbjct 611 TCATCGAGACCTACATCCGCGA----CGACGTCGAGAAGGACCGCCTCTTCCGCGCCATC 666 Query 125346 GACACGGTGCCGTCTATACGTAAAAAGGCTCAATGGGTGATTCGGTGGATCGATGACGAC 125405 ||||| | ||| | | || ||||| | |||| | | || |||||||| | || Sbjct 667 GACACCATCCCGGCCGTCCGCCGCAAGGCCGACTGGGCGCTGCGCTGGATCGACGGCGGG 726 Query 125406 AAGT-CTTCGTACGCCGACAGACTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTC 125464 || ||||| |||| | | || || |||||| ||| |||||||||||||| || Sbjct 727 GAGCGCTTCG----CCGAGCGCATCGTCGCCTTCGCCTGCGTCGAGGGCATCTTCTTCTC 782 Query 125465 GGG-TAGTTTTGCGGCCATCTTTTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGC 125523 ||| | || ||| |||||||| |||||||||||||| || |||||||| || || || Sbjct 783 GGGCTCCTTCTGC-GCCATCTTCTGGCTCAAGAAGCGGGGCCTCATGCCGGGCCTCACCT 841 Query 125524 ACAGTAACGAGTTTATATCTCGAGACGAGGGCCTACACTGTGACTTTGCCATTCTACTGT 125583 | |||||| | || || || ||||||||||| ||||| ||||| ||| || || | Sbjct 842 TCTCCAACGAGCTCATCTCCCGCGACGAGGGCCTGCACTGCGACTTCGCCTGCCTCCTCT 901 Query 125584 TTCGCAACTATCTGCGTCCCGAG-TGCA-GA-TCCAGCGATGAAAAGGTCATCAACATTG 125640 | || ||||| | || || | || ||| || ||| || | || | Sbjct 902 ---ACGACATCCTGCGCGGCAAGCTGGACGAGTCCCGC---------GTCTTCGAGATCG 949 Query 125641 TAACCGATGCCGTGAGGATAGAACAAGAGTTTCTAACCGAATCCCTACCGGTCAGCATGA 125700 | | || |||||| || || ||||| | ||| | || || | | Sbjct 950 TCTCGGAGGCCGTGGACATCGAGAGGGAGTTCGTCTGCGACGCGCTCCCCTGCGCGCTCG 1009 Query 125701 TTGGCATGAACTGCAAGCTAATGTGCGAGTACATAGAGTTTGTGGCAGATCGTCTACTGT 125760 | ||||||||| || | || ||| || ||||||| ||||| || || || || || || Sbjct 1010 TGGGCATGAACGGCGACCTCATGAGCCAGTACATCGAGTTCGTCGCCGACCGCCTGCTCA 1069 Query 125761 ACGAGTTGATTGGCCGCAAGATTTACAACGCCAAGAATCCCTTTGATTTCATGACCAGCA 125820 | | || || |||| | |||||||||| || || || || | ||| || Sbjct 1070 TGGCGCTGGGCTGCAACAAGCTGTACAACGCCACCAACCCGTTCGACTGGATGGAGCTCA 1129 Query 125821 TATCACTAGAGGGTAAGACCAACTTTTTCGAGAAGAAGGTCAGCGAGTAC 125870 | || || |||| ||||||||||| ||||||||| ||| |||||||| Sbjct 1130 TCTCGCTGCAGGGCAAGACCAACTTCTTCGAGAAGCGCGTCGGCGAGTAC 1179 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 724214739119200