Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hordeum_20pubiflorum_20[genbank_20GCA_5F000582825.1_202013-08-30] 1,818,420 sequences; 1,425,274,558 total letters Query= NC_004690.1 Length=113220 Score E Sequences producing significant alignments: (Bits) Value seq752483 87.8 1e-12 >seq752483 Length=2742 Score = 87.8 bits (96), Expect = 1e-12 Identities = 160/229 (70%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATC-GCT 15195 ||||| ||||| | | ||| | || |||||||| || || || ||||||||||| || Sbjct 1210 CCACCCCTCAACCGAAGAACAAGGTGGAGGGTGGACTCCTTCTGAATGTTGTAATCAGCC 1151 Query 15196 TAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGG 15255 || | | | ||||| | |||||| ||||| | || | | |||||||| ||| Sbjct 1150 AAG-GTGCGGCCATCTTCCAGTTGTTTCCCAGCAAAGATAAGCCTCTGTTGGTCTGGTGG 1092 Query 15256 AATTCCTTCTTTGTCACAAAT-TTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTA 15314 || || || ||||| || ||||| ||| ||| | || ||||| || | | || | Sbjct 1091 GATGCCCTCCTTGTCCTGGATCTTTGC-CTTGACATTGTCAATGGTGTCAGAACTCTCGA 1033 Query 15315 CATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 | |||| || ||||| || || || |||||||| ||||| || ||||| Sbjct 1032 CCTCTAGAGTTATGGTCTTCCCAGTAAGAGTTTTCACAAAGATCTGCAT 984 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 354152586833220