Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hordeum_20pubiflorum_20[genbank_20GCA_5F000582825.1_202013-08-30] 1,818,420 sequences; 1,425,274,558 total letters Query= NC_004778.3 Length=129593 Score E Sequences producing significant alignments: (Bits) Value seq1743593 95.1 1e-14 seq164858 89.7 4e-13 seq759537 86.0 5e-12 seq8128 86.0 5e-12 >seq1743593 Length=9171 Score = 95.1 bits (104), Expect = 1e-14 Identities = 147/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 18832 CACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTC 18891 ||||| ||| | ||||||||||| ||||| ||||||||||||| || | ||||| Sbjct 1333 CACCAGGTGGAGAGTAGACTCCTTCTGAATGTTGTAATCCGCCAGAGTGCGACCATCCTC 1392 Query 18892 CAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGC 18951 ||||| || || ||| | || | |||||||| ||| ||| | |||||| ||||| Sbjct 1393 AAGCTGCTTGCCAGCAAAGATCAACCTCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTG 1452 Query 18952 AATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTT 19011 || ||| || || | | ||| || || || ||| || | ||| ||||| || Sbjct 1453 GATCTTCGCCTTCACGTTGTCGATGGTGTCTGAAGATTCCACCTCCAGGGTGATGGTCTT 1512 Query 19012 ACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 || || || || |||||||| || ||||| Sbjct 1513 GCCAGTCAAGGTCTTGACAAAGATCTGCAT 1542 >seq164858 Length=2471 Score = 89.7 bits (98), Expect = 4e-13 Identities = 148/211 (70%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 18832 CACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTC 18891 ||||| ||| | ||||||||||| || || ||||| || |||| || | | ||||| Sbjct 1918 CACCAGGTGAAGGGTAGACTCCTTCTGGATGTTGTAGTCTGCCAGGGTGCGGCCATCCTC 1977 Query 18892 CAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGC 18951 ||||| || || || | ||||||| |||||| ||| ||| | |||||| ||||| Sbjct 1978 AAGCTGCTTGCCGGCGAAGATAAGTCGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTG 2037 Query 18952 AATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGG-CTCCGTTTCGACGGTAATGGTTT 19010 || ||| || || | | ||| || || | ||| |||| || | ||| ||||| | Sbjct 2038 GATCTTCGCCTTCACATTGTCGATGGTGTC-CGAGGACTCCACCTCCAAGGTGATGGTCT 2096 Query 19011 TACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 | || || | || ||||| ||||| ||||| Sbjct 2097 TGCCGGTGAGGGTCTTGACGAAAATCTGCAT 2127 >seq759537 Length=12225 Score = 86.0 bits (94), Expect = 5e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 18832 CACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTC 18891 ||||| ||| | || |||||||| ||||||||||||||||| | || | ||||||| Sbjct 2646 CACCAGGTGTAGGGTGGACTCCTTCTGAATATTGTAATCCGCGAGAGTGCGGCCGTCCTC 2705 Query 18892 CAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGC 18951 ||||| || || || | || || | |||||| ||| || | |||||| ||||| Sbjct 2706 GAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCCGGCGGGATGCCCTCCTTGTCCTT 2765 Query 18952 AATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTT 19011 || ||| || || | | ||| || ||| | |||| |||| ||| ||||| || Sbjct 2766 GATCTTCGCCTTGACATTGTCGATGGTGTCGGAGGACTCCACCTCGAGGGTGATGGTCTT 2825 Query 19012 ACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 || || | || || || || || ||||| Sbjct 2826 GCCGGTGAGGGTCTTCACGAAGATCTGCAT 2855 >seq8128 Length=3827 Score = 86.0 bits (94), Expect = 5e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 18832 CACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTC 18891 ||||| || | ||||||||||| ||||| ||||||||||||| || ||||||| Sbjct 3501 CACCAGATGGAGAGTAGACTCCTTCTGAATGTTGTAATCCGCCAGAGTGCGACCGTCCTC 3442 Query 18892 CAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGC 18951 ||||| || |||||| | || | |||||||| ||| || | |||||| ||||| Sbjct 3441 AAGCTGCTTGCCCGCAAAGATCAACCTCTGCTGGTCCGGAGGGATGCCCTCCTTGTCCTG 3382 Query 18952 AATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTT 19011 || ||| || || | | | | ||||| || ||| || | |||||||| || Sbjct 3381 GATCTTCGCCTTCACATTGTCAATGGTATCCGAAGACTCGACCTCCAGAGTAATGGTCTT 3322 Query 19012 ACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 || || | ||||| || || || ||||| Sbjct 3321 GCCGGTGAGGGTTTTCACGAAGATCTGCAT 3292 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 405385040197480