Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hordeum_20pubiflorum_20[genbank_20GCA_5F000582825.1_202013-08-30] 1,818,420 sequences; 1,425,274,558 total letters Query= NC_005069.1 Length=46339 Score E Sequences producing significant alignments: (Bits) Value seq38087 367 4e-97 >seq38087 Length=6230 Score = 367 bits (406), Expect = 4e-97 Identities = 1106/1692 (65%), Gaps = 47/1692 (3%) Strand=Plus/Minus Query 21703 GCAGTTTTAATACAGCGCATAATGATTTTCCGTGAGATATTCTCAGCTTCAGCTAATTTA 21762 || || || |||||||| |||| || || ||||| ||||| || || ||||| | | Sbjct 5629 GCGGTGTTGATACAGCGGGTAATAATCTTACGTGAAATATTTTCCGCATCAGCCAGCGCA 5570 Query 21763 CTTACATTCCCATCAAAATCATTATGCAGACGGCGTGAATAACGTTGGCCGCGCTCAAAT 21822 | ||| ||| |||| ||||| |||| |||| || |||||| || || || ||| | Sbjct 5569 GAAATATTTCCAGCAAATTCATTCTGCAATCGGCTTGCATAACGCTGACCACGTTCATAA 5510 Query 21823 GCTGATGTAGGTCGGTAATCGTTACCGATTTGCGACAGCCATGCCATTTGCTCTTCGTCT 21882 || ||| || || ||||||||||| | | || | ||||| ||||| || || Sbjct 5509 GCACTTGTTGGGCGATAATCGTTACCCAATCTGGATAATGCAGCCATCTGCTCATCATCC 5450 Query 21883 AAATCCCCGACAAGGACCCGATAATCTGTTTTTGTAATTATTGCAGTTTTGCGGCGGCGA 21942 | || || || || || |||||||| ||| |||| | |||| ||| || |||||| Sbjct 5449 AGCTCGCCAACCAGAACACGATAATCACTTTCGGTAAGTGCAGCAGCTTTACGACGGCGA 5390 Query 21943 CTGCCATCAGCTACTTCTATAACGCCGTTTACTTCGCGGCCATAGGCAGGGTTCTGCTGG 22002 || ||||| || | |||||| || || |||| || || | || || |||| || Sbjct 5389 CTCCCATCGGCAATTTCTATGACACCAGATACTCTTCGACCGAACGCCGGTGTCTGTTGA 5330 Query 22003 CCAGATAATTTGAATGAAGGGATCAGGTCATCTAATGCGGTTTCAGTTAGCAACTCTTGG 22062 |||| | | || |||||||| || ||||| | |||| ||||| |||| ||| ||| Sbjct 5329 CCAGTCAGTAGAAAAGAAGGGATGAGATCATCCAGTGCGTCCTCAGTAAGCAGCTCCTGG 5270 Query 22063 TCACGCTCATTCCCGCACCAAACCATTGTGGCCTTATTAACTCTTTCTGCTGGTATGGTT 22122 ||||| ||||| || |||| ||| | || ||| | ||| || || | | | | Sbjct 5269 TCACGTTCATTACCTGACCATACCCGAGAGGTCTTCTCAACACTATCACCCCGGAGCACT 5210 Query 22123 TTAAGAACAAAATGAACATCACGGCCACAGACAGAAAGGGTAATCTGATTACCG---GTC 22179 | |||| ||| | ||||| || ||||| |||| | ||||| ||||||| | | Sbjct 5209 TCAAGAGTAAACTTCACATCCCGACCACATACAGGCAAAGTAATGGCATTACCGCGAGCC 5150 Query 22180 ATTGCATTAACGCGAGATGTTAACTGTGAAACTGCT---GGAGCAGCTGGTTGCCGAGTT 22236 ||| | ||||| | ||||| ||| | | || ||||||||| | ||| | Sbjct 5149 ATTACTCCTACGCGCGCAATTAAC---GAATCCACCATCGGGGCAGCTGGT-GTCGA--T 5096 Query 22237 ACAGAGCCAGGCGCTGGGACCGTGGTCGCATTATTCATTTCG-ATTTTTGGGGCGTTCTT 22295 | || || || |||| || | | |||| | || || ||| || Sbjct 5095 AACGA---AGTATCTTCAACCG--GTTG-AGTATTGAG--CGTATGTTTTGGA------- 5051 Query 22296 CATTACTGGTGCACGTTTCATT-TCAAATTCTCCCAACGCGGCTTAATTAAGCGATTATA 22354 || || || ||||| |||||| || ||| |||||| || || ||||| | |||| | Sbjct 5050 -ATAACAGGCGCACGCTTCATTATCTAAT-CTCCCAGCGTGGTTTAATCAGACGATCGAA 4993 Query 22355 AATTTCTGCACAAACCGGCTCCCAGATAGCCACAGCATTGCGCCAGGCATTTGGAGTACT 22414 |||||| || || || ||||| |||| | |||||| | ||||||| | | | Sbjct 4992 AATTTCATTGCAGACAGGTTCCCAAATAGAAAGAGCATTTCTCCAGGCACCAGTTGAAGA 4933 Query 22415 ACGTTGGTTAGCGGCTTGTTCGAACACAGTTCGCATACGAACTTGTCCTTTACCTACTTC 22474 ||||| | | ||| ||||| || ||||||| ||| || | || |||||||| ||||| Sbjct 4932 GCGTTGATCAATGGCCTGTTCAAAAACAGTTCTCATCCGGATCTGACCTTTACCAACTTC 4873 Query 22475 GTCAGTTACTCGAACAACTTCTTTAAGGACCATGCTGCCCCAAGCATCACGTATATGGTC 22534 || ||| | || ||||| | ||| || |||||||| ||||| ||||| || || || || Sbjct 4872 ATCCGTTTCACGTACAACATTTTTTAGAACCATGCTTCCCCAGGCATCCCGAATTTGCTC 4813 Query 22535 ATCCATCCACTGAGATTGGCTACCAACAGCATTACTGAATTTAGTAATCAATACCCTAAC 22594 ||||||||| | || || ||| | ||| ||| |||| |||| ||| | | || Sbjct 4812 CTCCATCCACGGGGACTGAGAGCCATTACTATTGCTGTATTTGGTAAGCAAAATACGTAC 4753 Query 22595 ATCAGGCTCAAACCCGCCGAGGTCCAC--TCCAGCCATAAGATCACGCAACATAGTGAAA 22652 ||||||||| ||||| || || || || | | |||||||| | |||| |||| Sbjct 4752 ATCAGGCTCGAACCCTTTAAGATCAACGTTCTTG--AGCAGATCACGAAGCATATCGAAA 4695 Query 22653 AATTGCAATGTGCTGACATAGTCATAAAGTTCAGCTGGAGTTGGTACAACAATGACATCA 22712 || |||| || | | |||||| | | ||||| || || || |||| | |||||| Sbjct 4694 AACTGCAGTGCGGAGGTGTAGTCAAACAACTCAGCAGGCGTGGGAACAATCAGCACATCA 4635 Query 22713 GCGGCACAAACCACATTTATTGTGCCTATGCCCAAGTTAGGTGCACTGTCTAAAACAACT 22772 || ||||| || ||||| || ||||| || |||| |||||| || ||||| | ||| | Sbjct 4634 GCAGCACATACGACATTAATCGTGCCGATACCCAGGTTAGGCGCGCTGTCAATAACTATG 4575 Query 22773 ACGTCATAGCTGTCCCATACGGACTCGATTGCAGCACGTAGCATCATGTGCGGTGCTACA 22832 || |||||| | || | || || || || ||||||| ||| || | Sbjct 4574 ACATCATAGTCATGAGCAACAGTTTCAATGGCCAGTCGGAGCATCAGGTGTGGATCGGTG 4515 Query 22833 GGGAGCTTTTCGGCATCA----TGCAAAGGATATAATTCAGACTCAATTCGATGGATGGC 22888 || || || | ||||| ||| | ||| |||| ||||| || || | || Sbjct 4514 GGCAGTTTACCTTCATCAAATTTGCCCA----TTAACTCAGTTTCAATACGGTGCAGAGC 4459 Query 22889 CAGACAGGATGGGATTATGTCCAGATTTGGCCAACATGTTGGTTTGATGGCGTACATAGC 22948 ||||||||| || || ||||| || ||||| || || || || || || || | | Sbjct 4458 CAGACAGGAAGGAATAATGTCAAGCCCCGGCCAGCAAGTGGGCTTTATTGCATAAGTGAC 4399 Query 22949 ATCATCACGTTCACCTAAGTAATAAGGGAGTAGAGTTTCGTCTTCGTGGATATGCAAATC 23008 ||| || ||| || | || |||| || ||||| || ||| | || ||||| | ||| Sbjct 4398 ATCGTCCTTTTCCCCAAGATAGAAAGGCAGGAGAGTGTCTTCTGCATGAATATGAAGATC 4339 Query 23009 AGGTACATACCCATGATAAAGGCTGGCGGTAGCTTGCGGATCTGTAGCATCAATCAATAG 23068 ||||| | || ||||| | ||| || | || || || || | || | | | Sbjct 4338 TGGTACCCATCCGTGATACATTGAGGCTGTTCCCTGGGGGTCGTTACCTTCCACGAGCAA 4279 Query 23069 TACGCGTAAGCCCTGCAATGCTAACCATTGAGCTGTATGCACTGAGGTACT--TGTTTTG 23126 || |||| |||| || || | ||||| ||| || || ||| |||||| Sbjct 4278 AACACGTAGCCCCTTCAGAGCCAGATCCTGAGCAAGATGAAC--AGAAACTGAGGTTTTG 4221 Query 23127 TATGCGCCACCTTTATGTGCCGCTATAGCCAATACTACTGGGTCTTGCCCATCAGGTCGT 23186 || |||| |||||||| || || | | | || ||| | | |||| ||| Sbjct 4220 TAAACGCCGCCTTTATGGGCAGCAACCCCGATCACCGGTGGAAATACGTCTTCAGCACGT 4161 Query 23187 TTCCAGCGTGTACCAAAATGATCCCGAAGGTCGTTAATTTGTTGAATCGTATATCCCGCT 23246 | | || |||||||| ||| || | | |||||||||| ||| ||||| || | Sbjct 4160 CGCAATCGCGTACCAAACACATCACGCATATGATTAATTTGTTCAATTGTATAACCAACA 4101 Query 23247 CTTTGTGGCACTCTGCCACGTGTAACCATATCCGCAGGTGGCAATTTTCCTGAGTCCTCG 23306 | ||| || | || || | ||||||||| | || | | |||| | |||| Sbjct 4100 CGTTGCTCAACCCGTCCTCGAATTTCCATATCCGGGTGCGGTAGTCGCCCTGCTTTCTCG 4041 Query 23307 CCATTGCGGATGGTCTGAGGGGTTACACCAACTAATTCTGCAGCTTCAGTAATACCCCAT 23366 ||| | ||| | ||||| | || |||||||| || || |||||| || | ||| Sbjct 4040 GCATCTCTGATAGCCTGAGAAGAAACCCCAACTAAATCCGCTGCTTCACCTATTCTCCAG 3981 Query 23367 CGACGAGTGATT 23378 || || || ||| Sbjct 3980 CGCCGGGTTATT 3969 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 144963802752040