Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hordeum_20pubiflorum_20[genbank_20GCA_5F000582825.1_202013-08-30] 1,818,420 sequences; 1,425,274,558 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq752483 149 1e-30 seq36911 122 2e-22 seq752332 113 1e-19 seq41905 109 1e-18 seq2818 100 6e-16 seq759537 98.7 2e-15 seq750497 98.7 2e-15 seq5142 96.9 8e-15 seq774187 91.5 3e-13 seq1033180 89.7 1e-12 >seq752483 Length=2742 Score = 149 bits (164), Expect = 1e-30 Identities = 171/230 (74%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || || || | || ||| || || || | || || || |||||||| || || ||| Sbjct 1213 ATCCCACCCCTCAACCGAAGAACAAGGTGGAGGGTGGACTCCTTCTGAATGTTGTAATCA 1154 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 | | || | || ||||| |||||||| |||||||| || ||||||||||| || || Sbjct 1153 GCCAAGGTGCGGCCATCTTCCAGTTGTTTCCCAGCAAAGATAAGCCTCTGTTGGTCTGGT 1094 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || || || || || ||||| |||||||| || ||||| || | ||| || | || Sbjct 1093 GGGATGCCCTCCTTGTCCTGGATCTTTGCCTTGACATTGTCAATGGTGTCAGAACTCTCG 1034 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 |||||||| || || ||||| |||||||| ||||| ||||| |||||||| Sbjct 1033 ACCTCTAGAGTTATGGTCTTCCCAGTAAGAGTTTTCACAAAGATCTGCAT 984 Score = 136 bits (150), Expect = 9e-27 Identities = 168/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || ||||| || | || || || || | ||||| || || || || || || || Sbjct 985 ATCCCACCTCTCAGGCGGAGAACAAGGTGGAGGGTAGACTCCTTTTGGATGTTGTAATCG 926 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 | | || | || || ||||| || || |||||||| || ||||||||||| || ||| Sbjct 925 GCCAATGTCCGGCCATCCTCTAGCTGCTTGCCAGCAAATATGAGCCTCTGTTGGTCCGGA 866 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || || || || || ||||||||||| ||||| ||||| || | |||||| | || Sbjct 865 GGGATGCCCTCCTTGTCCTGAATCTTGGCTTTAACATTGTCAATGGTATCCGAACCCTCA 806 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 ||||| || || |||||||| || || || || |||||||| |||||||| Sbjct 805 ACCTCGAGGGTGATAGTCTTGCCGGTGAGGGTCTTTACAAAGATCTGCAT 756 >seq36911 Length=12065 Score = 122 bits (134), Expect = 2e-22 Identities = 145/197 (74%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 ||||| || ||||| || ||||| |||| || || | || || || || || || ||| Sbjct 7786 GTAGACTCCTTCTGGATGTTATAATCAGCAAGGGTACGGCCATCCTCCAGCTGCTTGCCA 7845 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 |||||||| || | ||| || || || || || || || || ||||| ||||| || || Sbjct 7846 GCAAAAATGAGGCGCTGCTGGTCTGGGGGAATGCCCTCCTTGTCCTGGATCTTGGCCTTG 7905 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 ||||| || | ||| ||| | ||| ||||| ||||| || ||||| || || || || Sbjct 7906 ACATTGTCAATGGTGTCGGAGGATTCCACCTCAAGTGTGATGGTCTTGCCGGTGAGGGTC 7965 Query 104543 TTTACAAATATCTGCAT 104559 || ||||| |||||||| Sbjct 7966 TTGACAAAGATCTGCAT 7982 >seq752332 Length=10290 Score = 113 bits (124), Expect = 1e-19 Identities = 143/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || || || ||||| || || ||||||| || || | || || || || || |||||| Sbjct 5317 GTGGACTCCTTCTGGATGTTGTAGTCAGCGAGGGTACGGCCATCCTCCAGCTGCTTTCCA 5376 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 ||||| || || | ||| || || ||||| || || || || ||||| ||||| || || Sbjct 5377 GCAAAGATGAGACGCTGCTGGTCCGGAGGAATGCCCTCCTTGTCCTGGATCTTGGCCTTG 5436 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 ||||| || | ||| || | || ||||| || || || ||||| || || ||||| Sbjct 5437 ACATTGTCAATGGTGTCAGACGACTCCACCTCAAGGGTGATGGTCTTGCCCGTCAGTGTC 5496 Query 104543 TTTACAAATATCTGCAT 104559 || ||||| |||||||| Sbjct 5497 TTCACAAAGATCTGCAT 5513 >seq41905 Length=7320 Score = 109 bits (120), Expect = 1e-18 Identities = 152/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 104347 AAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTC 104406 ||| || || || | |||||||| ||||| || || ||||| | || || | || || Sbjct 3209 AAGCACCAGGTGGAGAGTAGATTCCTTCTGGATGTTGTAGTCTGCCAGGGTGCGGCCATC 3268 Query 104407 TTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATC 104466 || || || || |||||||| || || | ||| || || ||||| || || || || || Sbjct 3269 CTCCAGCTGCTTGCCAGCAAAGATGAGGCGCTGCTGGTCCGGAGGGATGCCCTCCTTGTC 3328 Query 104467 CTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGT 104526 ||| |||||||| || || || || | ||| || | || ||||| | || || || Sbjct 3329 CTGGATCTTTGCCTTCACGTTGTCGATGGTGTCAGATGACTCCACCTCCAAAGTGATTGT 3388 Query 104527 CTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 ||| || || || || || |||||||||||||| Sbjct 3389 CTTGCCGGTGAGGGTCTTCACAAATATCTGCAT 3421 Score = 89.7 bits (98), Expect = 1e-12 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || || || ||||| || || ||||| | || || | || || || || || || ||| Sbjct 2997 GTGGACTCCTTCTGGATGTTGTAGTCGGCCAGGGTGCGGCCATCCTCAAGCTGCTTACCA 3056 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 || || || || | ||| || || || || || || || || ||||| ||||| || || Sbjct 3057 GCGAAGATCAGGCGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGGATCTTCGCCTTC 3116 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 || || || | ||| || | || ||||| | || |||||||| || || || || Sbjct 3117 ACGTTGTCGATGGTGTCAGATGACTCCACCTCCAAGGTGATAGTCTTGCCGGTGAGGGTC 3176 Query 104543 TTTACAAATATCTGCAT 104559 || |||||||||||||| Sbjct 3177 TTCACAAATATCTGCAT 3193 >seq2818 Length=2550 Score = 100 bits (110), Expect = 6e-16 Identities = 108/142 (76%), Gaps = 1/142 (1%) Strand=Plus/Plus Query 104329 TATTCCC-CCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGT 104387 || |||| || || ||||| || || | ||| | ||| || ||||||||||| || |||| Sbjct 521 TAGTCCCACCCCTGAGCCTCAGGACCAAATGAAGTGTCGACTCTTTCTGAATGTTGTAGT 580 Query 104388 CAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAG 104447 | | || || | || ||||| || || |||||||||||||||||||| || || || | Sbjct 581 CGGCTAATGTCCGTCCATCTTCCAGCTGCTTTCCAGCAAAAATTAGCCTTTGCTGGTCCG 640 Query 104448 GAGGTATTCCTTCTTTATCCTG 104469 | || || ||||| || ||||| Sbjct 641 GTGGGATGCCTTCCTTGTCCTG 662 >seq759537 Length=12225 Score = 98.7 bits (108), Expect = 2e-15 Identities = 149/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 104348 AGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCT 104407 || || || |||| || || || ||||||||||| || || | ||||| | ||||| Sbjct 2644 AGCACCAGGTGTAGGGTGGACTCCTTCTGAATATTGTAATCCGCGAGAGTGCGGCCGTCC 2703 Query 104408 TCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCC 104467 || || || || || || || || || | ||| || || || || || || || || ||| Sbjct 2704 TCGAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCCGGCGGGATGCCCTCCTTGTCC 2763 Query 104468 TGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTC 104527 | ||||| || || ||||| || | ||| ||| | || ||||| || || || ||| Sbjct 2764 TTGATCTTCGCCTTGACATTGTCGATGGTGTCGGAGGACTCCACCTCGAGGGTGATGGTC 2823 Query 104528 TTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || || || || || || || || |||||||| Sbjct 2824 TTGCCGGTGAGGGTCTTCACGAAGATCTGCAT 2855 >seq750497 Length=14261 Score = 98.7 bits (108), Expect = 2e-15 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || ||||| ||||| || || ||||| | | || | || || || || || || ||| Sbjct 10866 GTGGATTCCTTCTGGATGTTGTAGTCCGCCAAGGTGCGGCCATCCTCAAGCTGCTTACCA 10925 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 ||||| || || | ||| || || || || || || || || ||||||||||| || || Sbjct 10926 GCAAAGATCAGGCGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGAATCTTCGCCTTC 10985 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 || || || | ||| || || || ||||| || || || ||||| || || || || Sbjct 10986 ACGTTGTCAATGGTGTCAGAAGACTCAACCTCCAGGGTGATGGTCTTCCCGGTGAGGGTC 11045 Query 104543 TTTACAAATATCTGCAT 104559 || ||||| |||||||| Sbjct 11046 TTAACAAAAATCTGCAT 11062 Score = 96.9 bits (106), Expect = 8e-15 Identities = 152/218 (70%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 104342 AGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTA 104401 ||||| || |||| || | || || || ||||| || || || || | || || | | Sbjct 11073 AGCCTGAGCACTAAGTGGAGGGTGGACTCCTTCTGGATGTTGTAATCCGCAAGGGTGCGA 11132 Query 104402 CCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCT 104461 || || || || || || || ||||| || || | || || || || || || || || Sbjct 11133 CCATCCTCAAGCTGCTTGCCGGCAAAGATCAGGCGTTGCTGGTCTGGGGGAATGCCCTCC 11192 Query 104462 TTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTA 104521 || ||||| ||||| || || || || || | ||| || || || ||||| || || Sbjct 11193 TTGTCCTGGATCTTGGCCTTGACGTTGTCAATGGTGTCAGAAGACTCAACCTCCAGGGTG 11252 Query 104522 ATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || ||||| || || || || || |||||||||||||| Sbjct 11253 ATTGTCTTCCCCGTGAGGGTCTTGACAAATATCTGCAT 11290 >seq5142 Length=9133 Score = 96.9 bits (106), Expect = 8e-15 Identities = 106/141 (75%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 104331 TTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAG 104390 |||| || || ||||| || || | ||| | || || || |||||||| || || |||| Sbjct 2089 TTCCACCCCTGAGCCTCAGGACCAAATGGAGCGTCGACTCCTTCTGAATGTTGTAATCAG 2030 Query 104391 ATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAG 104450 || |||| || ||||| | || |||||||||||||||||||| || ||||| || | Sbjct 2029 CTAATGTTCGCCCATCTTCCAACTGCTTTCCAGCAAAAATTAGCCTTTGCTGATCTGGGG 1970 Query 104451 GTATTCCTTCTTTATCCTGAA 104471 | || || || || ||||||| Sbjct 1969 GAATGCCCTCCTTGTCCTGAA 1949 >seq774187 Length=2036 Score = 91.5 bits (100), Expect = 3e-13 Identities = 117/159 (74%), Gaps = 2/159 (1%) Strand=Plus/Minus Query 104402 CCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCT 104461 || || || || || || ||||| || || || | ||| || || ||||| || || || Sbjct 2034 CCATCCTCGAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGGTCCGGAGGGATGCCCTCC 1975 Query 104462 TTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGT-TCTACCTCTAGTGT 104520 || ||||| ||||| || || || || || | |||||| | ||| || ||||| || || Sbjct 1974 TTGTCCTGGATCTTAGCCTTGACGTTGTCGATGGTATC-CGAGGACTCGACCTCAAGGGT 1916 Query 104521 AATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || ||||| || || || || || |||||||||||||| Sbjct 1915 GATGGTCTTGCCGGTGAGGGTCTTCACAAATATCTGCAT 1877 >seq1033180 Length=366 Score = 89.7 bits (98), Expect = 1e-12 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || || || ||||| || || ||||| | ||| || | ||||| || || || || || Sbjct 73 GTGGACTCCTTCTGGATGTTGTAGTCTGCTAGGGTGCGGCCGTCCTCAAGCTGCTTGCCC 132 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 || || || || | ||| || || || || || || || || ||||||||||| || || Sbjct 133 GCGAAGATGAGGCGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGAATCTTCGCCTTG 192 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 ||||| || | | || | || ||||| || || || ||||| || || || || Sbjct 193 ACATTGTCGATCATGTCAGAGGACTCAACCTCAAGGGTGATGGTCTTGCCGGTGAGGGTC 252 Query 104543 TTTACAAATATCTGCAT 104559 || ||||| |||||||| Sbjct 253 TTCACAAAAATCTGCAT 269 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1124572537181360