Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hordeum_20pubiflorum_20[genbank_20GCA_5F000582825.1_202013-08-30] 1,818,420 sequences; 1,425,274,558 total letters Query= NC_005337.1 Length=134431 Score E Sequences producing significant alignments: (Bits) Value seq4731 127 2e-24 seq7115 125 6e-24 >seq4731 Length=10017 Score = 127 bits (140), Expect = 2e-24 Identities = 181/249 (73%), Gaps = 8/249 (3%) Strand=Plus/Minus Query 5490 GCTCGGTGCGCA--CGCCCGTGGACCCGAATCCGCCTGCGCCTCTTTCCGTATCGTCCAG 5547 |||||| || || |||| ||||||||||| ||||| | || | | || |||| || Sbjct 3182 GCTCGGAGCTCAGACGCCGGTGGACCCGAACCCGCCCTCCCCGCGGACTGTGGCGTCGAG 3123 Query 5548 GCACGCCACCTCTTCCACATCGGGGAACGC-AGCGCGCTCGCAGATCAGCTGCGCTATTC 5606 | | ||||||| | || || || || | | | || | ||||| ||| || | | Sbjct 3122 GTCCTCCACCTCGGCGACCTCCGGCGTGGCGATCAC-CTGGACGATCATCTGTGCGACGC 3064 Query 5607 GGTCGCCCGTCTTTACCTCGAAATCGTTGTGGCCGAA--GTTGAACAGCACCACGCCCAC 5664 ||||||| | ||| || |||| || | |||| |||||| |||||||||||||| Sbjct 3063 GGTCGCCGGGCTTCACGGCGAAGTCCGCAT--CCGAGTGGTTGAAGAGCACCACGCCCAC 3006 Query 5665 GTTGCCGCGGTAGTCGGCGTCTATCACGCCCGCGCCCACGTCGATGAAGTGCTTGACCGC 5724 |||||||||||||||||| ||||| || ||||||||||||||| |||||| | ||| Sbjct 3005 CGGGCCGCGGTAGTCGGCGTCGATCACCCCGGCGCCCACGTCGATGGCGTGCTTCAGCGC 2946 Query 5725 CAGGCCGGA 5733 |||||| || Sbjct 2945 CAGGCCCGA 2937 >seq7115 Length=7031 Score = 125 bits (138), Expect = 6e-24 Identities = 178/247 (72%), Gaps = 10/247 (4%) Strand=Plus/Minus Query 5501 ACGCCCGTGGACCCGAATCCGCCTGCGCCTCTTTCCGTATCGTCCAGGCACGCCACCTCT 5560 ||||| ||||||||||| ||||| |||| | | || |||| ||| ||||||| Sbjct 1709 ACGCCGGTGGACCCGAAGCCGCCCTCGCCCCGGACGGTGGCGTCGAGGTCGTCCACCTCG 1650 Query 5561 TCCACATCGGGGAACGCAGCG---CGCTCGCAGATCAGCTGCGCTATTCGGTCGCCCGTC 5617 | || || || || ||| |||||| || ||||||||| | ||||| || | | Sbjct 1649 GCGACGTCCGG---CGTGGCGATCCGCTCGACGACCAGCTGCGCGACGCGGTCCCCGGGC 1593 Query 5618 TTTACCTCGAAATCGTTGTGGCCGAA--GTTGAACAGCACCACGCCCACGTTGCCGCGGT 5675 || || |||| ||| || |||| |||||| || || ||||| ||| ||| |||| Sbjct 1592 TTGACGGCGAAGTCGGCGT--CCGAGTGGTTGAAGAGGACGACGCCGACGGGGCCCCGGT 1535 Query 5676 AGTCGGCGTCTATCACGCCCGCGCCCACGTCGATGAAGTGCTTGACCGCCAGGCCGGAGC 5735 |||||||||| | ||||||||||||||||||||| |||||| |||||| || || | Sbjct 1534 AGTCGGCGTCCACCACGCCCGCGCCCACGTCGATCGCGTGCTTCCACGCCAGCCCCGACC 1475 Query 5736 GGGGAGC 5742 | || || Sbjct 1474 GCGGCGC 1468 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 420523537075040