Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hordeum_20pubiflorum_20[genbank_20GCA_5F000582825.1_202013-08-30] 1,818,420 sequences; 1,425,274,558 total letters Query= NC_005344.1 Length=39043 Score E Sequences producing significant alignments: (Bits) Value seq747945 156 1e-33 >seq747945 Length=243 Score = 156 bits (172), Expect = 1e-33 Identities = 154/199 (77%), Gaps = 0/199 (0%) Strand=Plus/Plus Query 34949 TGCTTATCTCGGTTGGCGATTTGGTTGATCGCGGTACAGAGAACGTCGAATGCCTGGAAT 35008 |||| || |||||||| || | ||||| ||||| | || |||||||| |||||||| Sbjct 41 TGCTGATTTCGGTTGGAGACCTTGTTGACCGCGGCGCGGAAAACGTCGAGTGCCTGGAGC 100 Query 35009 TAATCACATTCCCCTGGTTCAGAGCTGTACGTGGAAACCATGAGCAAATGATGATTGATG 35068 | || || | || |||||| | ||||| || || ||||||||||| ||||||||||||| Sbjct 101 TGATTACTATGCCTTGGTTCCGGGCTGTGCGAGGTAACCATGAGCAGATGATGATTGATG 160 Query 35069 GCTTATCAGAGCGTGGAAACGTCAATCACTGGCTGCTTAATGGCGGTGGCTGGTTCTTTA 35128 | |||| ||| ||||||||| || ||||||||| || ||||| | |||||||| | Sbjct 161 GGCTATCGGAGTATGGAAACGTTAACCACTGGCTGGAAAACGGCGGCGTGTGGTTCTTCA 220 Query 35129 ATCTCGATTACGACAAAGA 35147 ||| ||||| || ||||| Sbjct 221 GTCTTGATTATGAAAAAGA 239 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 122120756060200