Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hordeum_20pubiflorum_20[genbank_20GCA_5F000582825.1_202013-08-30] 1,818,420 sequences; 1,425,274,558 total letters Query= NC_005839.2 Length=131680 Score E Sequences producing significant alignments: (Bits) Value seq8128 105 6e-18 seq765366 100 2e-16 seq5304 96.9 3e-15 seq750497 95.1 1e-14 seq1033180 93.3 3e-14 seq41905 93.3 3e-14 seq37893 93.3 3e-14 seq774391 91.5 1e-13 seq184930 91.5 1e-13 seq36911 89.7 4e-13 seq6362 89.7 4e-13 seq752332 87.8 1e-12 seq164858 87.8 1e-12 seq7669 87.8 1e-12 seq4499 86.0 5e-12 >seq8128 Length=3827 Score = 105 bits (116), Expect = 6e-18 Identities = 152/212 (72%), Gaps = 2/212 (1%) Strand=Plus/Minus Query 48517 CACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCA-ATTGTCGCTCGTCCT 48575 ||| | ||| || || |||||| |||||||||||||| |||| | || || |||||| Sbjct 3501 CACCAGATGGAGAGTAGACTCCTTCTGAATGTTGTAATCCGCCAGAGTG-CGACCGTCCT 3443 Query 48576 CCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCA 48635 | |||||||| || | | || || | |||||| ||| || | | ||||||||| Sbjct 3442 CAAGCTGCTTGCCCGCAAAGATCAACCTCTGCTGGTCCGGAGGGATGCCCTCCTTGTCCT 3383 Query 48636 TAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTT 48695 || ||| ||| | | | |||||||| | |||||| ||| | || ||||| | Sbjct 3382 GGATCTTCGCCTTCACATTGTCAATGGTATCCGAAGACTCGACCTCCAGAGTAATGGTCT 3323 Query 48696 TACCGGTGAGAGTTTTCACAAAAATCTGCATC 48727 | |||||||| |||||||| || ||||||||| Sbjct 3322 TGCCGGTGAGGGTTTTCACGAAGATCTGCATC 3291 >seq765366 Length=14197 Score = 100 bits (110), Expect = 2e-16 Identities = 144/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 48524 TGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGC 48583 || || ||| |||||| || ||||||||||| |||| ||| | ||||| |||||| Sbjct 570 TGGAGGGTGGACTCCTTCTGGATGTTGTAATCGGCCAGGGTGCGCCCATCCTCGAGCTGC 629 Query 48584 TTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTC 48643 || || | | || || |||||||| ||| || | | ||||||||| || ||| Sbjct 630 TTGCCCGCAAAGATCAACCGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGGATCTTC 689 Query 48644 TGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTG 48703 ||||| | | || || |||| ||||||| ||| | || ||||| || |||||| Sbjct 690 GCCTTGACATTGTCAATCGTGTCGGAAGACTCCACCTCAAGAGTGATGGTCTTGCCGGTG 749 Query 48704 AGAGTTTTCACAAAAATCTGCAT 48726 || || ||||| || |||||||| Sbjct 750 AGGGTCTTCACGAAGATCTGCAT 772 >seq5304 Length=2956 Score = 96.9 bits (106), Expect = 3e-15 Identities = 146/205 (71%), Gaps = 2/205 (1%) Strand=Plus/Plus Query 48524 TGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCA-ATTGTCGCTCGTCCTCCAGCTG 48582 || || ||| |||||| |||||||||||||| || | | || || | ||||| ||||| Sbjct 699 TGCAGGGTGGACTCCTTCTGAATGTTGTAATCTGCAAGAGTG-CGGCCATCCTCGAGCTG 757 Query 48583 CTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTT 48642 ||| ||| | | || || |||||||| ||| | | | ||||||||| || || Sbjct 758 CTTGCCGGCAAAGATCAAGCGCTGCTGGTCCGGAAGGATGCCCTCCTTGTCCTGGATCTT 817 Query 48643 CTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGT 48702 | ||||| | | || || |||| ||||| ||||| || ||||| || || || Sbjct 818 CGCCTTGACATTGTCAATTGTGTCGGAGGACTCAACCTCGAGGGTGATGGTCTTGCCTGT 877 Query 48703 GAGAGTTTTCACAAAAATCTGCATC 48727 ||| || |||||||| ||||||||| Sbjct 878 GAGGGTCTTCACAAAGATCTGCATC 902 >seq750497 Length=14261 Score = 95.1 bits (104), Expect = 1e-14 Identities = 147/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 48517 CACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTC 48576 ||| || ||||| ||| ||||| || |||||||| || ||||| || | ||||| Sbjct 10853 CACCAAGTGAAGGGTGGATTCCTTCTGGATGTTGTAGTCCGCCAAGGTGCGGCCATCCTC 10912 Query 48577 CAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCAT 48636 ||||||||||| | | || | |||||||| ||| || | | ||||||||| Sbjct 10913 AAGCTGCTTACCAGCAAAGATCAGGCGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTG 10972 Query 48637 AATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTT 48696 ||| ||| ||| | | ||||| || | |||||| ||| | || ||||| || Sbjct 10973 AATCTTCGCCTTCACGTTGTCAATGGTGTCAGAAGACTCAACCTCCAGGGTGATGGTCTT 11032 Query 48697 ACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 |||||||| || || |||||||||||||| Sbjct 11033 CCCGGTGAGGGTCTTAACAAAAATCTGCAT 11062 >seq1033180 Length=366 Score = 93.3 bits (102), Expect = 3e-14 Identities = 147/211 (70%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 48517 CACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTC 48576 ||| || || || ||| |||||| || |||||||| || || | || ||||||| Sbjct 60 CACCAAGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCTGCTAGGGTGCGGCCGTCCTC 119 Query 48577 CAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCAT 48636 |||||||| || || | || | |||||||| ||| || | | ||||||||| Sbjct 120 AAGCTGCTTGCCCGCGAAGATGAGGCGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTG 179 Query 48637 AATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTT 48696 ||| ||| ||||| | | || | || | ||||| ||| | || ||||| || Sbjct 180 AATCTTCGCCTTGACATTGTCGATCATGTCAGAGGACTCAACCTCAAGGGTGATGGTCTT 239 Query 48697 ACCGGTGAGAGTTTTCACAAAAATCTGCATC 48727 |||||||| || |||||||||||||||||| Sbjct 240 GCCGGTGAGGGTCTTCACAAAAATCTGCATC 270 >seq41905 Length=7320 Score = 93.3 bits (102), Expect = 3e-14 Identities = 149/212 (70%), Gaps = 4/212 (2%) Strand=Plus/Plus Query 48517 CACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTC 48576 ||| || ||||| ||| |||||| || |||||||| || |||| || | ||||| Sbjct 2984 CACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCCAGGGTGCGGCCATCCTC 3043 Query 48577 CAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCAT 48636 ||||||||||| || | || | |||||||| ||| || | | ||||||||| Sbjct 3044 AAGCTGCTTACCAGCGAAGATCAGGCGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTG 3103 Query 48637 AATTTTCTGCTTGA--TAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTT 48694 || ||| ||| | | | || ||||| || | |||||| ||| | || || || Sbjct 3104 GATCTTCGCCTTCACGTTGTCG--ATGGTGTCAGATGACTCCACCTCCAAGGTGATAGTC 3161 Query 48695 TTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 || |||||||| || |||||||| |||||||| Sbjct 3162 TTGCCGGTGAGGGTCTTCACAAATATCTGCAT 3193 >seq37893 Length=9373 Score = 93.3 bits (102), Expect = 3e-14 Identities = 144/206 (70%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 48500 CCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCC 48559 || ||||||| || | ||| || ||||| ||| |||||| || |||||||| || ||| Sbjct 206 CCACCGCGCAGCCGGAGCACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCCGCC 147 Query 48560 AATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGC 48619 | || | ||||| ||||||||||| || | || ||||||||||| ||| || Sbjct 146 AGGGTGCGGCCATCCTCAAGCTGCTTACCAGCGAAGATCAAACGCTGCTGGTCCGGGGGG 87 Query 48620 ACACTTTCCTTGTCCATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTC 48679 | | |||||||| || ||| ||| | | | ||||| || | ||||||| | Sbjct 86 ATGCCCTCCTTGTCTTGGATCTTCGCCTTCACATTGTCAATGGTGTCAGAAGACTCCACC 27 Query 48680 TCGACTGTTATGGTTTTACCGGTGAG 48705 || | || ||||| || |||||||| Sbjct 26 TCCAGGGTGATGGTCTTGCCGGTGAG 1 >seq774391 Length=5162 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 48500 CCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCC 48559 || || || | ||| | ||| | || || ||| |||||| || |||||||| |||||| Sbjct 5040 CCACCACGGAGCCTGAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGCC 4981 Query 48560 AATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGC 48619 || || | |||||||| ||||| || | | || | ||||||||| ||| || Sbjct 4980 AAGGTGCGGCCATCCTCCAGTTGCTTGCCAGCAAAGATGAGACGCTGCTGGTCCGGAGGG 4921 Query 48620 ACACTTTCCTTGTCCATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTC 48679 | | ||||| ||| || || ||| | | || || || | |||||| | Sbjct 4920 ATGCCCTCCTTATCCTGGATCTTGGCCTTCACGTTGTCAATCGTGTCAGAAGACTCAACC 4861 Query 48680 TCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCATC 48727 |||| || ||||| || ||||||||||| |||||||| ||||||||| Sbjct 4860 TCGAGGGTGATGGTCTTGCCGGTGAGAGTCTTCACAAAGATCTGCATC 4813 >seq184930 Length=1266 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 48517 CACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTC 48576 ||| || ||||| ||| |||||| || |||||||| || |||| || | ||||| Sbjct 531 CACCAAGTGAAGCGTGGACTCCTTCTGGATGTTGTAGTCCGCCAGGGTGCGGCCATCCTC 472 Query 48577 CAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCAT 48636 ||||||||||| || | || | |||||||| ||| || | | ||||||||| Sbjct 471 AAGCTGCTTACCAGCGAAGATCAGGCGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTG 412 Query 48637 AATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTT 48696 || ||| ||| | | | ||||| || | |||||| ||| | || || || || Sbjct 411 GATCTTCGCCTTCACATTGTCAATGGTGTCAGAAGACTCAACCTCCAAGGTGATAGTCTT 352 Query 48697 ACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 |||||||| || || ||||| |||||||| Sbjct 351 GCCGGTGAGGGTCTTGACAAAGATCTGCAT 322 Score = 82.4 bits (90), Expect = 6e-11 Identities = 140/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 48524 TGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGC 48583 || || ||| |||||| || |||||||| || |||| || | ||||| |||||| Sbjct 296 TGGAGGGTGGACTCCTTCTGGATGTTGTAGTCCGCCAGGGTGCGGCCATCCTCAAGCTGC 237 Query 48584 TTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTC 48643 |||||| || | |||| |||||||| ||| || | | ||||||||| || || Sbjct 236 TTACCGGCGAAGATTAGGCGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGGATCTTG 177 Query 48644 TGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTG 48703 ||||| | ||||| || | ||||| ||| | || ||||| || ||||| Sbjct 176 GCCTTGACGTTGTCAATGGTGTCCGAGGACTCGACCTCCAAGGTGATGGTCTTGCCGGTC 117 Query 48704 AGAGTTTTCACAAAAATCTGCAT 48726 || || || || ||||||||||| Sbjct 116 AGTGTCTTGACGAAAATCTGCAT 94 >seq36911 Length=12065 Score = 89.7 bits (98), Expect = 4e-13 Identities = 137/193 (71%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 48535 CTCCTTTTGAATGTTGTAATCAGCCAATTGT-CGCTCGTCCTCCAGCTGCTTACCGCCGT 48593 |||||| || ||||| |||||||| || || || | |||||||||||||| || | Sbjct 7791 CTCCTTCTGGATGTTATAATCAGC-AAGGGTACGGCCATCCTCCAGCTGCTTGCCAGCAA 7849 Query 48594 AAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTCTGCTTGATAG 48653 |||| | |||||||| || || | | ||||||||| || || ||||| | Sbjct 7850 AAATGAGGCGCTGCTGGTCTGGGGGAATGCCCTCCTTGTCCTGGATCTTGGCCTTGACAT 7909 Query 48654 ACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCA 48713 | ||||| |||| || ||| ||| | ||| ||||| || |||||||| || || | Sbjct 7910 TGTCAATGGTGTCGGAGGATTCCACCTCAAGTGTGATGGTCTTGCCGGTGAGGGTCTTGA 7969 Query 48714 CAAAAATCTGCAT 48726 |||| |||||||| Sbjct 7970 CAAAGATCTGCAT 7982 >seq6362 Length=4956 Score = 89.7 bits (98), Expect = 4e-13 Identities = 142/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 48524 TGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGC 48583 || || ||| |||||| || |||||||| || || | || |||||||||||||| Sbjct 2976 TGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCGAGAGTACGGCCGTCCTCCAGCTGC 3035 Query 48584 TTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTC 48643 || ||| || | || | |||||||| ||| ||| | | ||||||||| || || Sbjct 3036 TTGCCGGCGAAGATGAGCCGCTGCTGGTCCGGCGGGATCCCCTCCTTGTCCTGGATCTTG 3095 Query 48644 TGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTG 48703 ||||| | | ||||| || | |||||| ||| | || ||||| || || || Sbjct 3096 GCCTTGACATTGTCGATGGTGTCCGACGACTCCACCTCAAGCGTGATGGTCTTGCCCGTC 3155 Query 48704 AGAGTTTTCACAAAAATCTGCATC 48727 || || ||||| || ||||||||| Sbjct 3156 AGGGTCTTCACGAAGATCTGCATC 3179 >seq752332 Length=10290 Score = 87.8 bits (96), Expect = 1e-12 Identities = 141/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 48524 TGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGC 48583 ||||| ||| |||||| || |||||||| ||||| | || | |||||||||||| Sbjct 4399 TGAAGGGTGGACTCCTTCTGGATGTTGTAGTCAGCGAGGGTGCGACCATCCTCCAGCTGC 4458 Query 48584 TTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTC 48643 || ||| || | || | ||||||||| ||| || | | ||||||||| || || Sbjct 4459 TTGCCGGCGAAGATGAGACGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTG 4518 Query 48644 TGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTG 48703 ||||| | | ||||| || | |||| ||| | || ||||| || |||||| Sbjct 4519 GCCTTGACATTGTCGATGGTGTCAGAGCTCTCCACCTCAAGGGTGATGGTCTTGCCGGTG 4578 Query 48704 AGAGTTTTCACAAAAATCTGCAT 48726 || || || || || |||||||| Sbjct 4579 AGGGTCTTTACGAAGATCTGCAT 4601 Score = 87.8 bits (96), Expect = 1e-12 Identities = 145/205 (71%), Gaps = 6/205 (3%) Strand=Plus/Plus Query 48524 TGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGT-CGCTCGTCCTCCAGCTG 48582 ||||| ||| |||||| || |||||||| ||||| || || || | ||||||||||| Sbjct 5083 TGAAGGGTGGACTCCTTCTGGATGTTGTAGTCAGC-AAGGGTACGGCCATCCTCCAGCTG 5141 Query 48583 CTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTT 48642 ||| || || | || | ||||||||| ||| || | | ||||||||| || || Sbjct 5142 CTTGCCAGCGAATATGAGACGCTGCTGGTCCGGAGGAATGCCCTCCTTGTCCTGGATCTT 5201 Query 48643 CTGCTTGA--TAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCG 48700 ||||| | | || || ||||||| |||| ||| | || ||||| || || Sbjct 5202 GGCCTTGACGTTGTCG--ATTGTATCGGAGCTCTCCACCTCCAAAGTGATGGTCTTGCCA 5259 Query 48701 GTGAGAGTTTTCACAAAAATCTGCA 48725 ||||| || ||||| || ||||||| Sbjct 5260 GTGAGGGTCTTCACGAAGATCTGCA 5284 Score = 84.2 bits (92), Expect = 2e-11 Identities = 141/204 (69%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 48524 TGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGC 48583 || || ||| |||||| || |||||||| ||||| | || | |||||||||||| Sbjct 5311 TGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGCGAGGGTACGGCCATCCTCCAGCTGC 5370 Query 48584 TTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTC 48643 || || | | || | ||||||||| ||| || | | ||||||||| || || Sbjct 5371 TTTCCAGCAAAGATGAGACGCTGCTGGTCCGGAGGAATGCCCTCCTTGTCCTGGATCTTG 5430 Query 48644 TGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTG 48703 ||||| | | ||||| || | |||||| ||| | || ||||| || || || Sbjct 5431 GCCTTGACATTGTCAATGGTGTCAGACGACTCCACCTCAAGGGTGATGGTCTTGCCCGTC 5490 Query 48704 AGAGTTTTCACAAAAATCTGCATC 48727 || || |||||||| ||||||||| Sbjct 5491 AGTGTCTTCACAAAGATCTGCATC 5514 >seq164858 Length=2471 Score = 87.8 bits (96), Expect = 1e-12 Identities = 141/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 48524 TGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGC 48583 ||||| || |||||| || |||||||| || |||| || | ||||| |||||| Sbjct 1925 TGAAGGGTAGACTCCTTCTGGATGTTGTAGTCTGCCAGGGTGCGGCCATCCTCAAGCTGC 1984 Query 48584 TTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTC 48643 || ||| || | || | |||||||| ||| || | | ||||||||| || ||| Sbjct 1985 TTGCCGGCGAAGATAAGTCGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGGATCTTC 2044 Query 48644 TGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTG 48703 ||| | | | ||||| || | |||||| ||| | || ||||| || |||||| Sbjct 2045 GCCTTCACATTGTCGATGGTGTCCGAGGACTCCACCTCCAAGGTGATGGTCTTGCCGGTG 2104 Query 48704 AGAGTTTTCACAAAAATCTGCAT 48726 || || || || ||||||||||| Sbjct 2105 AGGGTCTTGACGAAAATCTGCAT 2127 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 48500 CCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCC 48559 ||||| |||| ||| | ||| | || || ||| |||||| || |||||||| |||||| Sbjct 2129 CCTCCACGCAGCCTGAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGCC 2188 Query 48560 AATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGC 48619 | || | ||||| |||||||| ||| | | || | |||||||| ||| || Sbjct 2189 AGGGTGCGGCCATCCTCGAGCTGCTTGCCGGCAAAGATGAGGCGCTGCTGGTCCGGAGGG 2248 Query 48620 ACACTTTCCTTGTCCATAATTTTCTGCTTGA--TAGACGCTATGGTATCGGTAGACTCCG 48677 | | ||||||||| || || ||||| | | || || || || | |||||| Sbjct 2249 ATTCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCG--ATCGTGTCTGAGGACTCCA 2306 Query 48678 TCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 ||| | || ||||| || || || || || || || ||||||||||| Sbjct 2307 CCTCAAGGGTGATGGTCTTGCCAGTCAGGGTCTTGACGAAAATCTGCAT 2355 >seq7669 Length=6130 Score = 87.8 bits (96), Expect = 1e-12 Identities = 146/211 (69%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 48517 CACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTC 48576 ||| | ||| || ||| |||||| || |||||||| ||||||| || | ||||| Sbjct 5997 CACCAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGCCAGGGTGCGGCCATCCTC 5938 Query 48577 CAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCAT 48636 |||||||| || | | || | |||||||| ||| || | | ||||||||| Sbjct 5937 AAGCTGCTTGCCAGCAAAGATGAGGCGCTGCTGGTCCGGAGGGATGCCCTCCTTGTCCTG 5878 Query 48637 AATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTT 48696 || ||| ||||| | ||||| || | |||||| ||| | || ||||| || Sbjct 5877 GATCTTCGCCTTGACGTTGTCAATGGTGTCCGAGGACTCCACCTCAAGGGTGATGGTCTT 5818 Query 48697 ACCGGTGAGAGTTTTCACAAAAATCTGCATC 48727 |||||||| || || || |||||||||||| Sbjct 5817 GCCGGTGAGGGTCTTAACGAAAATCTGCATC 5787 >seq4499 Length=5690 Score = 86.0 bits (94), Expect = 5e-12 Identities = 139/198 (70%), Gaps = 4/198 (2%) Strand=Plus/Minus Query 48535 CTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTA 48594 |||||| || |||||||| || || | || ||||||| |||||||||||| || | Sbjct 607 CTCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGGCCGTCCTCGAGCTGCTTACCGGCGAA 548 Query 48595 AATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTCTGCTTGA--TA 48652 || | |||||||| ||| ||| | | ||||||||| || || ||||| | Sbjct 547 GATGAGGCGCTGCTGGTCCGGCGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTT 488 Query 48653 GACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTC 48712 | || ||||| || | |||||| ||| | || ||||| || || || || || ||| Sbjct 487 GTCG--ATGGTGTCCGAGGACTCCACCTCCAGCGTGATGGTCTTGCCCGTCAGGGTCTTC 430 Query 48713 ACAAAAATCTGCATCGTG 48730 || || ||||||||| || Sbjct 429 ACGAAGATCTGCATCTTG 412 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 411915433538420