Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hordeum_20pubiflorum_20[genbank_20GCA_5F000582825.1_202013-08-30] 1,818,420 sequences; 1,425,274,558 total letters Query= NC_005856.1 Length=94800 Score E Sequences producing significant alignments: (Bits) Value seq33668 598 2e-166 seq15737 558 2e-154 seq1814210 412 2e-110 >seq33668 Length=331 Score = 598 bits (662), Expect = 2e-166 Identities = 331/331 (100%), Gaps = 0/331 (0%) Strand=Plus/Minus Query 7965 GGATGCTGGCTTTCATGTATTCGATGTTGATGGCCGTTTTGTTCTTGCGTGGATGCTGTT 8024 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 331 GGATGCTGGCTTTCATGTATTCGATGTTGATGGCCGTTTTGTTCTTGCGTGGATGCTGTT 272 Query 8025 TCAAGGTTCTTACCTTGCCGGGGCGCTCGGCGATCAGCCAGTCCACATCCACCTCGGCCA 8084 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 271 TCAAGGTTCTTACCTTGCCGGGGCGCTCGGCGATCAGCCAGTCCACATCCACCTCGGCCA 212 Query 8085 GCTCCTCGCGCTGTGGCGCCCCTTGGTAGCCGGCATCGGCTGAGACAAATTGCTCCTCTC 8144 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 211 GCTCCTCGCGCTGTGGCGCCCCTTGGTAGCCGGCATCGGCTGAGACAAATTGCTCCTCTC 152 Query 8145 CATGCAGCAGATTACCCAGCTGATTGAGGTCATGCTCGTTGGCCGCGGTGGTGACCAGGC 8204 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 151 CATGCAGCAGATTACCCAGCTGATTGAGGTCATGCTCGTTGGCCGCGGTGGTGACCAGGC 92 Query 8205 TGTGGGTCAGGCCACTCTTGGCATCGACACCAATGTGGGCCTTCATGCCAAAGTGCCACT 8264 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 91 TGTGGGTCAGGCCACTCTTGGCATCGACACCAATGTGGGCCTTCATGCCAAAGTGCCACT 32 Query 8265 GATTGCCTTTCTTGGTCTGATGCATCTCCGG 8295 ||||||||||||||||||||||||||||||| Sbjct 31 GATTGCCTTTCTTGGTCTGATGCATCTCCGG 1 >seq15737 Length=309 Score = 558 bits (618), Expect = 2e-154 Identities = 309/309 (100%), Gaps = 0/309 (0%) Strand=Plus/Minus Query 8275 CTTGGTCTGATGCATCTCCGGATCGCGTTGCTGCTCTTTGTTCTTGGTCGAGCTGGGTGC 8334 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 309 CTTGGTCTGATGCATCTCCGGATCGCGTTGCTGCTCTTTGTTCTTGGTCGAGCTGGGTGC 250 Query 8335 CTCAATGATGGTGGCATCGACCAAGGTGCCTTGAGTCATCATGACGCCTGCTTCGGCCAG 8394 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 249 CTCAATGATGGTGGCATCGACCAAGGTGCCTTGAGTCATCATGACGCCTGCTTCGGCCAG 190 Query 8395 CCAGCGATTGATGGTCTTGAACAATTGGCGGGCCAGTTGATGCTGCTCCAGCAGGTGGCG 8454 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 189 CCAGCGATTGATGGTCTTGAACAATTGGCGGGCCAGTTGATGCTGCTCCAGCAGGTGGCG 130 Query 8455 GAAATTCATGATGGTGGTGCGGTCCGGCAAGGCGCTATCCAGGGATAACCGGGCAAACAG 8514 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 129 GAAATTCATGATGGTGGTGCGGTCCGGCAAGGCGCTATCCAGGGATAACCGGGCAAACAG 70 Query 8515 ACGCATGGAGGCGATTTCGTACAGAGCATCTTCCATCGCGCCATCGCTCAGGTTGTACCA 8574 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 69 ACGCATGGAGGCGATTTCGTACAGAGCATCTTCCATCGCGCCATCGCTCAGGTTGTACCA 10 Query 8575 ATGCTGCAT 8583 ||||||||| Sbjct 9 ATGCTGCAT 1 >seq1814210 Length=228 Score = 412 bits (456), Expect = 2e-110 Identities = 228/228 (100%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 7733 CGTAAATGCCTTGAATCAGCCTATTTAGACCGTTTCTTCGCCATTTAAGGCGTTATCCCC 7792 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 228 CGTAAATGCCTTGAATCAGCCTATTTAGACCGTTTCTTCGCCATTTAAGGCGTTATCCCC 169 Query 7793 AGTTTTTAGTGAGATCTCTCCCACTGACGTATCATTTGGTCCGCCCGAAACAGGTTGGCC 7852 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 168 AGTTTTTAGTGAGATCTCTCCCACTGACGTATCATTTGGTCCGCCCGAAACAGGTTGGCC 109 Query 7853 AGCGTGAATAACATCGCCAGTTGGTTATCGTTTTTCAGCAACCCCTTGTATCTGGCTTTC 7912 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 108 AGCGTGAATAACATCGCCAGTTGGTTATCGTTTTTCAGCAACCCCTTGTATCTGGCTTTC 49 Query 7913 ACGAAGCCGAACTGTCGCTTGATGATGCGAAATGGGTGCTCCACCCTG 7960 |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 48 ACGAAGCCGAACTGTCGCTTGATGATGCGAAATGGGTGCTCCACCCTG 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 296514903392820