Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hordeum_20pubiflorum_20[genbank_20GCA_5F000582825.1_202013-08-30] 1,818,420 sequences; 1,425,274,558 total letters Query= NC_005857.1 Length=51601 Score E Sequences producing significant alignments: (Bits) Value seq38087 430 4e-116 >seq38087 Length=6230 Score = 430 bits (476), Expect = 4e-116 Identities = 784/1140 (69%), Gaps = 12/1140 (1%) Strand=Plus/Minus Query 27456 GCTTCATTAT-TACTCCTCCCAACGTGGCTTAATCAAATCATCAAAAATTTCCTGGCAAA 27514 |||||||||| || || ||||| ||||| ||||||| | ||| |||||||| | ||| | Sbjct 5037 GCTTCATTATCTAATC-TCCCAGCGTGGTTTAATCAGACGATCGAAAATTTCATTGCAGA 4979 Query 27515 CAGGCTCCCAAATAGAAACTGCATTTCGCCAGGCGTTAAGTGTTGAGCGCTGATAAGCAG 27574 |||| ||||||||||||| ||||||| |||||| | || ||||| |||| | | Sbjct 4978 CAGGTTCCCAAATAGAAAGAGCATTTCTCCAGGCACCAGTTGAAGAGCGTTGATCAATGG 4919 Query 27575 CCTGCTCAAATACCGTACGCATTTTTATTTGGCCCTTTCCTACTTCATCTGTCACCCTGA 27634 |||| ||||| || || | ||| || || || || || |||||||| || | | | Sbjct 4918 CCTGTTCAAAAACAGTTCTCATCCGGATCTGACCTTTACCAACTTCATCCGTTTCACGTA 4859 Query 27635 CAACTTGACGCAGAACCATCGACCCCCACGTATTTCTTATCTGCTCTTCCATCCAGCGCG 27694 |||| | |||||||| ||||| | || | || ||||| |||||||| | | Sbjct 4858 CAACATTTTTTAGAACCATGCTTCCCCAGGCATCCCGAATTTGCTCCTCCATCCACGGGG 4799 Query 27695 ACTGATTACCAGTAGTCAGGCTGTATTTGGTTAGCAGCAGTCGTACCACCGGCTCGAAAC 27754 ||||| ||| || | |||||||||||| |||| | ||||| | |||||||| | Sbjct 4798 ACTGAGAGCCATTACTATTGCTGTATTTGGTAAGCAAAATACGTACATCAGGCTCGAACC 4739 Query 27755 CGCCTAAATCAACGGTTTTTAGTAGGTCCAGAAGCATGGTGAAGAACTGCAGAACGGATG 27814 | | ||||||| | || || || || ||||||| ||| |||||||| |||| | Sbjct 4738 CTTTAAGATCAACGTTCTTGAGCAGATCACGAAGCATATCGAAAAACTGCAGTGCGGAGG 4679 Query 27815 AATAATCAAATAGCTCTGCAGGGGTAGCTACGACAATAATATCGGCAGCACAAACAACAT 27874 || ||||| | ||| ||||| || | || | | | ||| |||||||| || |||| Sbjct 4678 TGTAGTCAAACAACTCAGCAGGCGTGGGAACAATCAGCACATCAGCAGCACATACGACAT 4619 Query 27875 TAATCGTCCCTGTTCCGAGGTTAGGAGCGCTATCAATAACGATAATGTCATAGTTATCCC 27934 ||||||| || | || |||||||| ||||| |||||||| || | ||||||| || Sbjct 4618 TAATCGTGCCGATACCCAGGTTAGGCGCGCTGTCAATAACTATGACATCATAGTCATGAG 4559 Query 27935 ATACGGATTCTATAGCAGCCCGTAGCATCAGGTGAGG--CGGATGAGGTAGTTTTCCTTG 27992 || | ||| || || || ||||||||||| || ||| || || ||||| |||| Sbjct 4558 CAACAGTTTCAATGGCCAGTCGGAGCATCAGGTGTGGATCGG-TG-GGCAGTTTACCTT- 4502 Query 27993 GGCGTGGTATT---GCATCAGGTCCGTTTCGATACGGTGAAGCGCCAAGCAGCTGGGGAT 28049 | | ||| ||| | || ||||| |||||||| || |||| ||| || || Sbjct 4501 --CATCAAATTTGCCCATTAACTCAGTTTCAATACGGTGCAGAGCCAGACAGGAAGGAAT 4444 Query 28050 AATGTCCAGACCTGGCCAGCAGGTCGGCTTTATAGCGTATTCCGCATTATCACGCTCACC 28109 |||||| || || |||||||| || |||||||| || || ||| || || || Sbjct 4443 AATGTCAAGCCCCGGCCAGCAAGTGGGCTTTATTGCATAAGTGACATCGTCCTTTTCCCC 4384 Query 28110 AAGGTAAAACGGGAGCAAAGTATCATCGGCGTGAATGTGCAAATCAGGCACATAGCCATG 28169 ||| || || || || | ||| || || || ||||| || | ||| || || | || || Sbjct 4383 AAGATAGAAAGGCAGGAGAGTGTCTTCTGCATGAATATGAAGATCTGGTACCCATCCGTG 4324 Query 28170 ATACATAGAGGCGGTTCCCTGCGGATCATTACCTTCAATGAGTAGAACTCGGTGACCCTG 28229 |||||| ||||| |||||||| || || |||||||| | ||| | ||| || | |||| Sbjct 4323 ATACATTGAGGCTGTTCCCTGGGGGTCGTTACCTTCCACGAGCAAAACACGTAGCCCCTT 4264 Query 28230 TAAGGCTAACCATTGAGCTTCATGTACTGCAGATGAGGTTTTATAAACGCCACCTTTGTG 28289 | || | ||||| ||| || | | ||||||||| |||||||| ||||| || Sbjct 4263 CAGAGCCAGATCCTGAGCAAGATGAACAGAAACTGAGGTTTTGTAAACGCCGCCTTTATG 4204 Query 28290 TGACATAACAGCTAAAACGGCTGGATTTTTATCGGCTGGCCGTTGATTAGGATTACCGAA 28349 | ||| | | || | |||| | || | | ||| | | |||| || Sbjct 4203 GGCAGCAACCCCGATCACCGGTGGAAATACGTCTTCAGCACGTCGCAATCGCGTACCAAA 4144 Query 28350 AATGTTCCGCATATGGCTAATTTGGTCGATGGTATAGCCAGCACGACGTTCGACGCGGCC 28409 | | |||||||| ||||||| || || ||||| ||| |||| | || || || || Sbjct 4143 CACATCACGCATATGATTAATTTGTTCAATTGTATAACCAACACGTTGCTCAACCCGTCC 4084 Query 28410 ACGCAATTCAAAATCAGGTGGCGGTAACCGCCCATTCTTCTCAGCATCTCTAATCGCTTG 28469 || | ||| | ||| || |||||| ||||| ||||| |||||||| || || || Sbjct 4083 TCGAATTTCCATATCCGGGTGCGGTAGTCGCCCTGCTTTCTCGGCATCTCTGATAGCCTG 4024 Query 28470 CGGTGAAACACCGATTAAATCAGCAACCTCGGTTATCCCCCAGCGACGAGTAATCTTACG 28529 | ||||| || | |||||| || | || ||| | |||||| || || || || | Sbjct 4023 AGAAGAAACCCCAACTAAATCCGCTGCTTCACCTATTCTCCAGCGCCGGGTTATTTTCCT 3964 Query 28530 TGCTTCAGGGCTATCATCACCAAATTGCGCTATGGCAATGGCTTGCGTCATCTCTTGTCC 28589 ||||| ||||| |||||| ||| || || ||||| || || | |||||| || || || Sbjct 3963 CGCTTCCGGGCTGTCATCATTAAACTGTGCAATGGCGATAGCCTTCGTCATTTCATGACC 3904 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 161438598762520