Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hordeum_20pubiflorum_20[genbank_20GCA_5F000582825.1_202013-08-30] 1,818,420 sequences; 1,425,274,558 total letters Query= NC_005906.1 Length=81755 Score E Sequences producing significant alignments: (Bits) Value seq16312 111 8e-20 seq2321 111 8e-20 seq53405 109 3e-19 seq782539 104 1e-17 seq3287 104 1e-17 seq754018 102 4e-17 seq278651 100 1e-16 seq129347 100 1e-16 seq1786951 98.7 5e-16 seq1747801 98.7 5e-16 seq44177 96.9 2e-15 seq773600 95.1 6e-15 seq770405 95.1 6e-15 seq151095 95.1 6e-15 seq79387 95.1 6e-15 seq7284 95.1 6e-15 seq776539 93.3 2e-14 seq760437 93.3 2e-14 seq94315 93.3 2e-14 seq76996 93.3 2e-14 seq2694 93.3 2e-14 seq1746147 91.5 8e-14 seq6691 91.5 8e-14 seq3988 87.8 9e-13 seq77966 84.2 1e-11 seq49840 82.4 4e-11 >seq16312 Length=957 Score = 111 bits (122), Expect = 8e-20 Identities = 69/75 (92%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 ||||||||| |||||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 591 TGGCCCATGGGGGGATCGAACCCACGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 532 Query 11516 TGAGCTAATGGGCCG 11530 ||||||||||||||| Sbjct 531 TGAGCTAATGGGCCG 517 >seq2321 Length=16238 Score = 111 bits (122), Expect = 8e-20 Identities = 82/94 (87%), Gaps = 3/94 (3%) Strand=Plus/Minus Query 11437 AATTAATAAA-AAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATT 11495 ||| |||||| |||| |||||||||||| | | |||||||| |||||||||||||||| Sbjct 12980 AATAAATAAATAAAT--AATTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATT 12923 Query 11496 AGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 ||||||||||||| |||| |||||||||| |||| Sbjct 12922 AGCACGACGCTCTAACCAGCTGAGCTAATAGGCC 12889 >seq53405 Length=4928 Score = 109 bits (120), Expect = 3e-19 Identities = 68/74 (92%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 ||||||||| |||||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 2987 TGGCCCATGGGGGGATCGAACCCACGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 2928 Query 11516 TGAGCTAATGGGCC 11529 |||||||||||||| Sbjct 2927 TGAGCTAATGGGCC 2914 >seq782539 Length=2051 Score = 104 bits (114), Expect = 1e-17 Identities = 76/89 (85%), Gaps = 4/89 (4%) Strand=Plus/Minus Query 11445 AAAAATCAAAT----TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCAC 11500 |||||| |||| ||||||||| | | |||||||| ||||||||||||||||||||| Sbjct 1652 AAAAATTAAATGCAGTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCAC 1593 Query 11501 GACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||| |||| |||||||||| |||| Sbjct 1592 GACGCTCTAACCAGCTGAGCTAATAGGCC 1564 >seq3287 Length=6414 Score = 104 bits (114), Expect = 1e-17 Identities = 91/112 (81%), Gaps = 8/112 (7%) Strand=Plus/Minus Query 11441 AATAAAAAATCAAA----TTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTA 11496 ||||||||| |||| ||||||||| | | |||||||| |||||||||||||||| Sbjct 6313 AATAAAAAAGCAAAAAAATTGGCCCATACAGGTCTCGAACCTATGACCTTCGCGTTATTA 6254 Query 11497 GCACGACGCTCTRACCAACTGAGCTAATGGGCCGTCGACGATTGTGATTTTT 11548 |||||||||||| |||| |||||||||| |||| |||| |||| ||||| Sbjct 6253 GCACGACGCTCTAACCAGCTGAGCTAATAGGCC--TGACGTTTGT--TTTTT 6206 Score = 98.7 bits (108), Expect = 5e-16 Identities = 68/78 (87%), Gaps = 0/78 (0%) Strand=Plus/Minus Query 11452 AAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRAC 11511 ||||||||||| | | |||||||| |||||||||||||||||||||||||||| || Sbjct 3525 AAATTGGCCCACACAGGTCTCGAACCTGTGACCTTCGCGTTATTAGCACGACGCTCTAAC 3466 Query 11512 CAACTGAGCTAATGGGCC 11529 ||||||||||||| |||| Sbjct 3465 CAACTGAGCTAATAGGCC 3448 >seq754018 Length=3308 Score = 102 bits (112), Expect = 4e-17 Identities = 74/85 (87%), Gaps = 1/85 (1%) Strand=Plus/Minus Query 11445 AAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACG 11504 ||||| || |||||||||| | | |||||||| ||||||||||||||||||||||||| Sbjct 594 AAAAAGCAT-TTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACG 536 Query 11505 CTCTRACCAACTGAGCTAATGGGCC 11529 |||| |||| |||||||||| |||| Sbjct 535 CTCTAACCAGCTGAGCTAATAGGCC 511 >seq278651 Length=1433 Score = 100 bits (110), Expect = 1e-16 Identities = 68/77 (88%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 11453 AATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACC 11512 || ||||||||| | | |||||||| ||||||| ||||||||||||| ||||||| ||| Sbjct 946 AACTGGCCCATGCAGGTTTCGAACCTGCGACCTTGGCGTTATTAGCACCACGCTCTAACC 1005 Query 11513 AACTGAGCTAATGGGCC 11529 ||||||||||||||||| Sbjct 1006 AACTGAGCTAATGGGCC 1022 >seq129347 Length=6615 Score = 100 bits (110), Expect = 1e-16 Identities = 66/74 (89%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 ||||||||| | | |||||||| ||||||||||||||||||||||||||||| |||| | Sbjct 2161 TGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAGC 2220 Query 11516 TGAGCTAATGGGCC 11529 ||||||||| |||| Sbjct 2221 TGAGCTAATAGGCC 2234 >seq1786951 Length=365 Score = 98.7 bits (108), Expect = 5e-16 Identities = 75/89 (84%), Gaps = 3/89 (3%) Strand=Plus/Plus Query 11444 AAAAAATCAAATT---GGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCAC 11500 |||||| | |||| ||||||| | | |||||||| |||||||||||||||||||| Sbjct 98 AAAAAAACGAATTAATGGCCCATACAGGTCTCGAACCTGTGACCTTCGCGTTATTAGCAC 157 Query 11501 GACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||| |||| ||||||||||||||| Sbjct 158 GACGCTCTAACCAGCTGAGCTAATGGGCC 186 >seq1747801 Length=12704 Score = 98.7 bits (108), Expect = 5e-16 Identities = 73/86 (85%), Gaps = 0/86 (0%) Strand=Plus/Minus Query 11444 AAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGAC 11503 ||||||||| | |||||||| | | ||||||| ||||||||||||||||||||||| Sbjct 12578 AAAAAATCATAATGGCCCATACAGGTCCCGAACCTGTGACCTTCGCGTTATTAGCACGAC 12519 Query 11504 GCTCTRACCAACTGAGCTAATGGGCC 11529 ||||| |||| |||||||||| |||| Sbjct 12518 GCTCTAACCAGCTGAGCTAATAGGCC 12493 >seq44177 Length=4127 Score = 96.9 bits (106), Expect = 2e-15 Identities = 80/98 (82%), Gaps = 3/98 (3%) Strand=Plus/Minus Query 11432 TATAGAATTAATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGT 11491 || |||| || ||||||| | |||||||| | | |||||||| ||||||||||| Sbjct 4115 TAAAGAACAAAAAAAAAATGA---TGGCCCATACAGGTCTCGAACCTGTGACCTTCGCGT 4059 Query 11492 TATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 ||||||||||||||||| |||| |||||||||| |||| Sbjct 4058 TATTAGCACGACGCTCTAACCAGCTGAGCTAATAGGCC 4021 >seq773600 Length=4425 Score = 95.1 bits (104), Expect = 6e-15 Identities = 65/74 (88%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 ||||||||| | | |||||||| ||||||||||||||||||||||||||||| |||| | Sbjct 3232 TGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAGC 3173 Query 11516 TGAGCTAATGGGCC 11529 | ||||||| |||| Sbjct 3172 TAAGCTAATAGGCC 3159 >seq770405 Length=3164 Score = 95.1 bits (104), Expect = 6e-15 Identities = 72/85 (85%), Gaps = 2/85 (2%) Strand=Plus/Minus Query 11445 AAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACG 11504 |||||| | ||||||||| | | |||||||| |||||||||||||||||||||||| Sbjct 3150 AAAAAT--AGTTGGCCCATACAGGTCTCGAACCTGTGACCTTCGCGTTATTAGCACGACG 3093 Query 11505 CTCTRACCAACTGAGCTAATGGGCC 11529 |||| |||| |||||||||| |||| Sbjct 3092 CTCTAACCAGCTGAGCTAATAGGCC 3068 >seq151095 Length=10795 Score = 95.1 bits (104), Expect = 6e-15 Identities = 77/93 (83%), Gaps = 2/93 (2%) Strand=Plus/Minus Query 11445 AAAAATCAAAT--TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGA 11502 ||||| |||| |||||||| | | |||||||| |||||||||||||||||||||| Sbjct 4225 AAAAAGAAAATGATGGCCCATACAGGTCTCGAACCTGTGACCTTCGCGTTATTAGCACGA 4166 Query 11503 CGCTCTRACCAACTGAGCTAATGGGCCGTCGAC 11535 |||||| |||| |||||||||| |||| | ||| Sbjct 4165 CGCTCTAACCAGCTGAGCTAATAGGCCTTTGAC 4133 >seq79387 Length=3772 Score = 95.1 bits (104), Expect = 6e-15 Identities = 78/95 (82%), Gaps = 2/95 (2%) Strand=Plus/Minus Query 11435 AGAATTAATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTAT 11494 |||| || ||| ||| || |||||||| | | |||||||| |||||||||||||| Sbjct 3645 AGAAAAAAAAAAGAATTAA--TGGCCCATACAGGTCTCGAACCTGTGACCTTCGCGTTAT 3588 Query 11495 TAGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||||||||| |||| |||||||||| |||| Sbjct 3587 TAGCACGACGCTCTAACCAGCTGAGCTAATAGGCC 3553 >seq7284 Length=9059 Score = 95.1 bits (104), Expect = 6e-15 Identities = 72/85 (85%), Gaps = 3/85 (4%) Strand=Plus/Minus Query 11445 AAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACG 11504 |||||| |||||||||| | | |||||||| |||||||||||||||||||||||| Sbjct 6166 AAAAAT---ATTGGCCCATACAGGTCTCGAACCTGTGACCTTCGCGTTATTAGCACGACG 6110 Query 11505 CTCTRACCAACTGAGCTAATGGGCC 11529 |||| |||| |||||||||| |||| Sbjct 6109 CTCTAACCAGCTGAGCTAATAGGCC 6085 >seq776539 Length=5057 Score = 93.3 bits (102), Expect = 2e-14 Identities = 67/77 (87%), Gaps = 1/77 (1%) Strand=Plus/Minus Query 11452 AAAT-TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRA 11510 |||| |||||||| | | |||||||| |||||||||||||||||||||||||||| | Sbjct 117 AAATGTGGCCCATACAGGTCTCGAACCTGTGACCTTCGCGTTATTAGCACGACGCTCTAA 58 Query 11511 CCAACTGAGCTAATGGG 11527 |||||||||||||| || Sbjct 57 CCAACTGAGCTAATAGG 41 >seq760437 Length=16571 Score = 93.3 bits (102), Expect = 2e-14 Identities = 71/85 (84%), Gaps = 0/85 (0%) Strand=Plus/Minus Query 11445 AAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACG 11504 ||||| | | |||||||| | | |||||||| |||||||||||||||||||||||| Sbjct 4583 AAAAAAAAGAGTGGCCCATACAGGTCTCGAACCTGTGACCTTCGCGTTATTAGCACGACG 4524 Query 11505 CTCTRACCAACTGAGCTAATGGGCC 11529 |||| |||| |||||||||| |||| Sbjct 4523 CTCTAACCAGCTGAGCTAATAGGCC 4499 >seq94315 Length=780 Score = 93.3 bits (102), Expect = 2e-14 Identities = 73/87 (84%), Gaps = 1/87 (1%) Strand=Plus/Plus Query 11444 AAAAAATCAA-ATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGA 11502 |||||| || | |||||||| | | |||||||| |||||||||||||||||||||| Sbjct 516 AAAAAAGGAATAATGGCCCATACAGGTCTCGAACCTGTGACCTTCGCGTTATTAGCACGA 575 Query 11503 CGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||| |||| |||||||||| |||| Sbjct 576 CGCTCTAACCAGCTGAGCTAATAGGCC 602 >seq76996 Length=6594 Score = 93.3 bits (102), Expect = 2e-14 Identities = 73/87 (84%), Gaps = 1/87 (1%) Strand=Plus/Minus Query 11444 AAAAAATCA-AATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGA 11502 |||||| | || |||||||| | | |||||||| |||||||||||||||||||||| Sbjct 2335 AAAAAAGGATAAATGGCCCATACAGGTCTCGAACCTGTGACCTTCGCGTTATTAGCACGA 2276 Query 11503 CGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||| |||| |||||||||| |||| Sbjct 2275 CGCTCTAACCAGCTGAGCTAATAGGCC 2249 >seq2694 Length=3940 Score = 93.3 bits (102), Expect = 2e-14 Identities = 73/87 (84%), Gaps = 1/87 (1%) Strand=Plus/Minus Query 11444 AAAAAATCA-AATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGA 11502 |||||| | || |||||||| | | |||||||| |||||||||||||||||||||| Sbjct 1003 AAAAAAGGATAAATGGCCCATACAGGTCTCGAACCTGTGACCTTCGCGTTATTAGCACGA 944 Query 11503 CGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||| |||| |||||||||| |||| Sbjct 943 CGCTCTAACCAGCTGAGCTAATAGGCC 917 >seq1746147 Length=4249 Score = 91.5 bits (100), Expect = 8e-14 Identities = 72/86 (84%), Gaps = 2/86 (2%) Strand=Plus/Minus Query 11444 AAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGAC 11503 ||||||| | |||||||| | | |||||||| ||||||||||||||||||||||| Sbjct 3694 AAAAAATTAG--TGGCCCATACAGGTCTCGAACCTGTGACCTTCGCGTTATTAGCACGAC 3637 Query 11504 GCTCTRACCAACTGAGCTAATGGGCC 11529 ||||| |||| |||||||||| |||| Sbjct 3636 GCTCTAACCAGCTGAGCTAATAGGCC 3611 >seq6691 Length=7283 Score = 91.5 bits (100), Expect = 8e-14 Identities = 74/89 (83%), Gaps = 1/89 (1%) Strand=Plus/Minus Query 11441 AATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCAC 11500 || |||| || ||| ||||||| | | |||||||| |||||||||||||||||||| Sbjct 1598 AAAAAAAGATTTAAT-GGCCCATACAGGTCTCGAACCTGTGACCTTCGCGTTATTAGCAC 1540 Query 11501 GACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||| |||| |||||||||| |||| Sbjct 1539 GACGCTCTAACCAGCTGAGCTAATAGGCC 1511 >seq3988 Length=6737 Score = 87.8 bits (96), Expect = 9e-13 Identities = 65/77 (84%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 11453 AATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACC 11512 |||||||||| || | |||||||| ||||| |||||||||||||||||||| | ||| Sbjct 1642 AATTGGCCCACAAAGGTCTCGAACCTGTGACCTCCGCGTTATTAGCACGACGCTATAACC 1701 Query 11513 AACTGAGCTAATGGGCC 11529 | |||||||||| |||| Sbjct 1702 AGCTGAGCTAATAGGCC 1718 >seq77966 Length=8301 Score = 84.2 bits (92), Expect = 1e-11 Identities = 65/78 (83%), Gaps = 0/78 (0%) Strand=Plus/Minus Query 11447 AAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCT 11506 ||| || | |||||||| | | |||||||| |||||||||||||||||||||||| | Sbjct 2416 AAAACAGAATGGCCCATACAGGTCTCGAACCTGTGACCTTCGCGTTATTAGCACGACGAT 2357 Query 11507 CTRACCAACTGAGCTAAT 11524 || |||| |||||||||| Sbjct 2356 CTAACCAGCTGAGCTAAT 2339 >seq49840 Length=14957 Score = 82.4 bits (90), Expect = 4e-11 Identities = 72/89 (81%), Gaps = 1/89 (1%) Strand=Plus/Minus Query 11441 AATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCAC 11500 || ||||| | ||| ||| ||| | | || ||||| |||||||||||||||||||| Sbjct 3061 AAAAAAAAGTTTAAT-GGCACATACAGGTCTCAAACCTATGACCTTCGCGTTATTAGCAC 3003 Query 11501 GACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||| |||| |||||||||| |||| Sbjct 3002 GACGCTCTAACCAGCTGAGCTAATCGGCC 2974 Lambda K H 0.638 0.409 0.919 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 255696033659920