Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hordeum_20pubiflorum_20[genbank_20GCA_5F000582825.1_202013-08-30] 1,818,420 sequences; 1,425,274,558 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq157740 181 2e-41 seq765180 141 1e-29 seq820110 129 9e-26 seq1755563 114 2e-21 seq759525 114 2e-21 seq789938 109 9e-20 seq824565 100 4e-17 seq299687 96.9 5e-16 seq1780621 95.1 2e-15 seq769872 91.5 2e-14 >seq157740 Length=1351 Score = 181 bits (200), Expect = 2e-41 Identities = 201/268 (75%), Gaps = 0/268 (0%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| ||||||||||| | || || || |||||||| |||||||||||||| || || Sbjct 899 CGCCAAGCGTCATCGTAAGGTGCTGCGTGACAACATCCAGGGAATCACCAAGCCCGCCAT 958 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||||||||||||||| |||||||||||||||||| |||| || | |||| || |||| Sbjct 959 CCGTCGTCTGGCTCGCCGTGGTGGAGTCAAGCGTATCTCCGGTCTCATCTACGAGGAGAC 1018 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 |||| ||| | ||| | ||||| ||| ||| |||| || || || ||| ||||| Sbjct 1019 CCGTGGTGTGCTCAAGGTGTTCCTTGAGAACGTCATCCGCGACGCCGTCACCTACACCGA 1078 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || | ||||| || || ||||||| | ||||| || | || ||||| || Sbjct 1079 GCACGCCAAGAGGAAGACCGTGACTGCCATGGACGTAGTCTACGCCCTCAAGCGTCAGGG 1138 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAA 16699 |||| | || ||||| ||| ||||| Sbjct 1139 ACGTACCCTGTACGGTTTCGGAGGTTAA 1166 >seq765180 Length=3200 Score = 141 bits (156), Expect = 1e-29 Identities = 164/221 (74%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513 || ||||| |||||||| || ||||||||||| || ||||| ||||| || || ||||| Sbjct 1157 CTCCGAGACAACATCCAGGGCATCACCAAGCCGGCCATCCGGCGTCTTGCGCGGCGTGGC 1216 Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573 || || ||||| |||| || | |||| || |||| || | || | ||||||||| Sbjct 1217 GGCGTGAAGCGCATCTCGGGGCTCATCTACGAGGAGACCCGCGGCGTGCTCAAGATCTTC 1276 Query 16574 CTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTC 16633 || ||| ||| || | || || || ||| |||||||||||| || ||||| ||| Sbjct 1277 CTTGAGAACGTCATTCGCGACGCCGTCACCTACACCGAGCACGCTCGTCGCAAGACCGTC 1336 Query 16634 ACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCG 16674 ||| ||||||| ||||||| ||| | || || || ||||| Sbjct 1337 ACCGCCATGGACGTCGTCTACGCACTCAAGCGCCAGGGCCG 1377 >seq820110 Length=943 Score = 129 bits (142), Expect = 9e-26 Identities = 143/191 (75%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513 || || || |||||||| || ||||||||||| || ||||| |||||||| || || || Sbjct 751 CTGCGCGACAACATCCAGGGCATCACCAAGCCGGCGATCCGCCGTCTGGCCCGGCGGGGC 810 Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573 || || ||||| |||| ||| | |||| || |||| || | || | ||||||||| Sbjct 811 GGCGTGAAGCGCATCTCGGGACTCATCTACGAGGAGACCCGCGGCGTGCTCAAGATCTTC 870 Query 16574 CTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTC 16633 ||| ||| ||| |||| || || || ||| ||||||||||| || ||||| ||| Sbjct 871 CTCGAGAACGTCATCCGCGACGCCGTCACCTACACCGAGCACGCCCGCCGCAAGACCGTC 930 Query 16634 ACCTCCATGGA 16644 ||| ||||||| Sbjct 931 ACCGCCATGGA 941 >seq1755563 Length=3952 Score = 114 bits (126), Expect = 2e-21 Identities = 171/240 (71%), Gaps = 2/240 (1%) Strand=Plus/Minus Query 16436 AAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCG 16494 ||||| || || | |||| || || || |||||| | || ||||||||||| || ||||| Sbjct 3167 AAGCGCCACCGGAAGATC-CTCCGCGACAACATCTATGGCATCACCAAGCCGGCGATCCG 3109 Query 16495 TCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCG 16554 | ||||| | | || || || ||||| |||| || ||||||| || |||| || Sbjct 3108 GAGGCTGGCGAGGAGGGGCGGCGTGAAGCGCATCTCCGGCATGGTCTACGACGAGACCCG 3049 Query 16555 TGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCA 16614 | || | ||| |||||||| || |||||||| || | || ||| ||| |||| Sbjct 3048 CGGCGTCCTCAAGCTCTTCCTCGAGCACGTTATCCGCGACGTCGTCGCCTACACCCAGCA 2989 Query 16615 CGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCG 16674 ||| || ||||| |||||| ||||||| ||||||| || | || || || ||||| Sbjct 2988 CGCCCGCCGCAAGACCGTCACCGCCATGGACGTCGTCTACGCGCTCAAGCGCCAGGGCCG 2929 >seq759525 Length=4682 Score = 114 bits (126), Expect = 2e-21 Identities = 156/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 16457 CGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGA 16516 || || |||||||| || ||||||||||| || || || || ||||| || | || || Sbjct 2590 CGGGACAACATCCAGGGGATCACCAAGCCGGCCATTCGGCGGCTGGCGCGGAGGGGCGGC 2649 Query 16517 GTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTC 16576 || ||||| |||| || | |||| || |||| || | || | ||||| ||||| Sbjct 2650 GTGAAGCGCATCTCCGGGCTCATCTACGAGGAGACCCGCGGCGTGCTCAAGATTTTCCTG 2709 Query 16577 AAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACC 16636 ||| ||| |||| || || || ||| ||||||||||| || ||||| |||||| Sbjct 2710 GAGAACGTCATCCGCGACGCCGTCACCTACACCGAGCACGCCCGCCGCAAGACCGTCACC 2769 Query 16637 TCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCG 16674 ||||||| |||| ||||| | || || || ||||| Sbjct 2770 GCCATGGACGTCGTGTATGCGCTCAAGCGCCAGGGCCG 2807 >seq789938 Length=1108 Score = 109 bits (120), Expect = 9e-20 Identities = 134/183 (73%), Gaps = 0/183 (0%) Strand=Plus/Plus Query 16453 TCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGG 16512 ||| || || |||||||| || ||||||||||| || ||||| || ||||| || || || Sbjct 926 TCTCCGCGACAACATCCAGGGCATCACCAAGCCGGCCATCCGGCGCCTGGCGCGGCGGGG 985 Query 16513 TGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTT 16572 || || ||||| |||| || | |||| || |||| || | || | |||||||| Sbjct 986 AGGCGTGAAGCGCATCTCCGGCCTCATCTACGAGGAGACCCGCGGCGTGCTCAAGATCTT 1045 Query 16573 CCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGT 16632 |||| ||| ||| |||| || || || ||| ||||||||||| || ||||| || Sbjct 1046 CCTCGAGAACGTCATCCGCGACGCCGTCACCTACACCGAGCACGCCCGCCGCAAGACCGT 1105 Query 16633 CAC 16635 ||| Sbjct 1106 CAC 1108 >seq824565 Length=1702 Score = 100 bits (110), Expect = 4e-17 Identities = 119/159 (75%), Gaps = 2/159 (1%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490 ||| ||||| || || | | || || || || |||||||| || ||||||||||| || | Sbjct 1543 CGCCAAGCGCCACCGGAAGGTC-CTCCGCGACAACATCCAGGGCATCACCAAGCCGGCGA 1601 Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGA 16550 |||||||||| || || ||||| || || ||||| |||| || | |||| || |||| Sbjct 1602 TCCGTCGTCTTGCGCGGCGTGGCGGCGTGAAGCGCATCTCGGGGCTCATCTACGAGGAGA 1661 Query 16551 TTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCC 16589 || | || | |||||||||||| ||| ||| |||| Sbjct 1662 CCCGCGGCGTGCTCAAGATCTTCCTCGAGAACGTCATCC 1700 >seq299687 Length=2694 Score = 96.9 bits (106), Expect = 5e-16 Identities = 125/173 (72%), Gaps = 0/173 (0%) Strand=Plus/Minus Query 16502 GCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTT 16561 ||||| ||||| || || |||||| |||| || || |||| || |||| || | || Sbjct 2692 GCTCGCCGTGGCGGCGTGAAGCGTATCTCGGGGCTGATCTACGAGGAGACCCGCGGCGTG 2633 Query 16562 TTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAA 16621 | ||||||||||| ||| ||| |||| || || || ||| ||||||||||| Sbjct 2632 CTCAAGATCTTCCTTGAGAACGTCATCCGCGACGCCGTCACCTACACCGAGCACGCCCGC 2573 Query 16622 CGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCG 16674 || ||||| |||||| ||||||| ||||||| || | || || || || || Sbjct 2572 CGCAAGACCGTCACCGCCATGGACGTCGTCTACGCGCTCAAGCGACAGGGACG 2520 >seq1780621 Length=250 Score = 95.1 bits (104), Expect = 2e-15 Identities = 94/122 (77%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513 || || || |||||||| || ||||||||||| || ||||||||||| ||||| ||||| Sbjct 129 CTGCGCGACAACATCCAGGGCATCACCAAGCCGGCCATCCGTCGTCTCGCTCGCCGTGGC 188 Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573 || || ||||| |||| || || |||| || |||| || | || | ||||||||| Sbjct 189 GGCGTGAAGCGCATCTCGGGGCTGATCTACGAGGAGACCCGCGGCGTGCTCAAGATCTTC 248 Query 16574 CT 16575 || Sbjct 249 CT 250 >seq769872 Length=3016 Score = 91.5 bits (100), Expect = 2e-14 Identities = 116/160 (73%), Gaps = 0/160 (0%) Strand=Plus/Minus Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513 || || || |||||||| || ||||| ||||| || ||||| || ||||| || || || Sbjct 160 CTGCGCGACAACATCCAGGGCATCACGAAGCCGGCGATCCGGCGGCTGGCGCGCCGGGGC 101 Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573 || || ||||| |||| || | |||| || |||| || | || | ||||||||| Sbjct 100 GGCGTGAAGCGCATCTCGGGGCTCATCTACGAGGAGACCCGCGGCGTGCTCAAGATCTTC 41 Query 16574 CTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGC 16613 ||| ||| ||| |||| || || || ||| ||||||| Sbjct 40 CTCGAGAACGTCATCCGCGACGCCGTCACCTACACCGAGC 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 77412605865060