Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hordeum_20pubiflorum_20[genbank_20GCA_5F000582825.1_202013-08-30] 1,818,420 sequences; 1,425,274,558 total letters Query= NC_006882.2 Length=45176 Score E Sequences producing significant alignments: (Bits) Value seq57095 273 6e-69 seq213450 194 5e-45 seq36335 134 4e-27 seq788035 91.5 4e-14 seq761979 84.2 6e-12 >seq57095 Length=8353 Score = 273 bits (302), Expect = 6e-69 Identities = 358/493 (73%), Gaps = 2/493 (0%) Strand=Plus/Minus Query 19299 TGGGTCACAAGTACCGAGAACCGCCTTTATGTAGGTTGGTTTGGAGTACTTATGATTCCT 19358 ||| | || || || || || || ||||| | || ||||| || || | ||||| ||| Sbjct 496 TGGATAACTAGCACTGAAAATCGTCTTTACATCGGATGGTTCGGTGTTTTGATGATCCCT 437 Query 19359 TGCTTACTAGCTGCTACTACTTGCTTTATACTCGCCTTTATCGCAGCACCGCCTGTAGAT 19418 |||| | | || ||| || ||||| ||||||| ||||| || || || |||||| Sbjct 436 ACCTTATTGACCGCAACTTCTGTATTTATTATCGCCTTCATCGCTGCCCCTCCAGTAGAT 377 Query 19419 ATAGATGGCATACGTGAGCCAGTTTCCGGCTCGTTAATGTACGGAAACAATATTATTTCT 19478 || ||||| || |||||||| ||||| || || ||| | || |||||||||||||| ||| Sbjct 376 ATTGATGGTATTCGTGAGCCTGTTTCTGGTTCTTTACTTTATGGAAACAATATTATCTCT 317 Query 19479 GGAGCAGTAGTTCCAAGCTCCAATGCAATAGGACTGCACTTTTATCCGATCTGGGAAGCC 19538 || || | |||| | || || || ||| |||||||||| || || |||||||| Sbjct 316 GGTGCTATTATTCCTACTTCTGCGGCGATCGGATTGCACTTTTACCCAATTTGGGAAGCT 257 Query 19539 GGCACTTTAGATGAGTGGTTATACAACGGCGGTCCATATCAACTTGTTGTCTTCCACTTC 19598 | || | ||||||||||||||||| || ||||| ||| | || |||| | |||||| Sbjct 256 GCATCTGTTGATGAGTGGTTATACAATGGTGGTCCTTATGAGCTAATTGTTCTACACTTC 197 Query 19599 TTAATAGGAGTAGCAGCATACGCTGGTAGACAGTGGGAACTATCTTACAGATTAGGAATG 19658 ||| | || ||||| || ||| | |||||||||| || | | | || ||| Sbjct 196 TTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACTTAGTTTCCGTCTGGGTATG 137 Query 19659 AGACCATGGATATTCGTAGCATATACAGCACCACTATCAGCAGCTCTTGCTGTGTTTCTC 19718 | || ||||| || |||||| |||| || | |||| ||| |||||| ||||| Sbjct 136 CGCCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTGCTGT-TTTCTT 78 Query 19719 G-TTTACCCATTTGGGCAAGGGAGTTTTAGTGATGGTATGCCTCTTGGTATCTCTGGTAC 19777 | ||||||| |||| ||||| || ||| ||||||||||||| | || ||||||||||| Sbjct 77 GATTTACCCTATTGGTCAAGGAAGCTTTTCTGATGGTATGCCTTTAGGAATCTCTGGTAC 18 Query 19778 TTTTAACTTTATG 19790 ||| ||||||||| Sbjct 17 TTTCAACTTTATG 5 >seq213450 Length=3525 Score = 194 bits (214), Expect = 5e-45 Identities = 231/310 (75%), Gaps = 9/310 (3%) Strand=Plus/Plus Query 19706 TGCTGTGTTTCTCG-TTTACCCATTTGGGCAAGGGAGTTTTAGTGATGGTATGCCTCTTG 19764 |||||| ||||| | |||| || |||| ||||| | ||| ||||||||||||| | | Sbjct 3222 TGCTGT-TTTCTTGATTTAGCCCATTGGTCAAGGAAACTTTTCTGATGGTATGCCTTTAG 3280 Query 19765 GTATCTCTGGTACTTTTAACTTTATGTTCGTATTCCAAGCAGAACACAATATCCTTATGC 19824 | |||||||||||||| ||||||||| | ||||| || |||| ||||| ||| |||||| Sbjct 3281 GAATCTCTGGTACTTTCAACTTTATGATTGTATTTCAGTCAGAGCACAACATCTTTATGC 3340 Query 19825 ATCCGTTCCACATGCTCGGTGTTGCTGGCGTATTCGGTGGATCTCTTTTCTCTGCTATGC 19884 ||| || |||||| | ||||| ||||| ||||||| || || || ||| |||||||| Sbjct 3341 ATCTATTTCACATGTTAGGTGTAGCTGGTGTATTCGTCGGTTCCCTATTCAATGCTATGC 3400 Query 19885 ACGGAAGTTTGGTTACTTCCTCGATCATCAAGGAAACAACTGAGGATGTATCGCAGAACT 19944 | || ||| || || | |||| |||||| ||||| ||| ||| || Sbjct 3401 ATGGTTCCATGG-TAGTT------TGATCAGGGAAACTACTGAAAATGAATCCGCTAATG 3453 Query 19945 ATGGCTATAAGTTCGGGCAAGATGAAGAGACATATAATATTGTCGCTGCACACGGGTACT 20004 | || || || || || ||||| |||||||| ||||||||||| ||||| || || || | Sbjct 3454 AGGGTTACAAATTTGGTCAAGAGGAAGAGACTTATAATATTGTGGCTGCTCATGGTTATT 3513 Query 20005 TTGGGAGATT 20014 |||| |||| Sbjct 3514 TTGGCCGATT 3523 >seq36335 Length=20465 Score = 134 bits (148), Expect = 4e-27 Identities = 106/127 (83%), Gaps = 0/127 (0%) Strand=Plus/Minus Query 19720 TTTACCCATTTGGGCAAGGGAGTTTTAGTGATGGTATGCCTCTTGGTATCTCTGGTACTT 19779 ||||||| |||| ||||| || ||| ||||||||||| | | || ||||| ||||||| Sbjct 3523 TTTACCCTATTGGTCAAGGAAGCTTTTCTGATGGTATGCTTTTAGGAATCTCCGGTACTT 3464 Query 19780 TTAACTTTATGTTCGTATTCCAAGCAGAACACAATATCCTTATGCATCCGTTCCACATGC 19839 | ||||||||| | |||||||| ||||| ||||| |||||||||||||| ||||||||| Sbjct 3463 TCAACTTTATGATTGTATTCCAGGCAGAGCACAACATCCTTATGCATCCATTCCACATGT 3404 Query 19840 TCGGTGT 19846 | ||||| Sbjct 3403 TAGGTGT 3397 >seq788035 Length=1366 Score = 91.5 bits (100), Expect = 4e-14 Identities = 98/130 (75%), Gaps = 0/130 (0%) Strand=Plus/Plus Query 19946 TGGCTATAAGTTCGGGCAAGATGAAGAGACATATAATATTGTCGCTGCACACGGGTACTT 20005 ||| || || || || ||||| ||||| || ||||| ||||| ||||| | || || | Sbjct 957 TGGTTACAAATTTGGTCAAGAGGAAGAAACTTATAACATTGTGGCTGCTAATGGTTATAT 1016 Query 20006 TGGGAGATTGATATTTCAATATGCTTCTTTCAATAATTCTCGTTCTTTACATTTCTTTCT 20065 ||| ||| || || ||||||||| ||| || || |||||||||||||| ||||| | Sbjct 1017 TGGCCAATTAATCTTCCAATATGCTAGTTTTAACAACTCTCGTTCTTTACACTTCTTCTT 1076 Query 20066 TGCTACTTTC 20075 ||| ||||| Sbjct 1077 GGCTGCTTTC 1086 >seq761979 Length=10221 Score = 84.2 bits (92), Expect = 6e-12 Identities = 136/196 (69%), Gaps = 0/196 (0%) Strand=Plus/Minus Query 19417 ATATAGATGGCATACGTGAGCCAGTTTCCGGCTCGTTAATGTACGGAAACAATATTATTT 19476 |||| |||| || | ||| | ||||| | || ||| | || | |||||||||||| | Sbjct 477 ATATTGATGATATTCATGAACATGTTTCTAGTTCTTTACTTTATGAAAACAATATTATCT 418 Query 19477 CTGGAGCAGTAGTTCCAAGCTCCAATGCAATAGGACTGCACTTTTATCCGATCTGGGAAG 19536 |||| || | |||| | || | | || | |||||||||| || || || ||| Sbjct 417 CTGGTGCTATTATTCCTACTTCGACGGTGATCAAATTGCACTTTTACCCAATTTGAAAAG 358 Query 19537 CCGGCACTTTAGATGAGTGGTTATACAACGGCGGTCCATATCAACTTGTTGTCTTCCACT 19596 | | | ||||||||||||||||| || ||||| ||| | || || | || |||| Sbjct 357 TTGCATCGGTTGATGAGTGGTTATACAATGGTGGTCCTTATGAGCTAATTTTTTTACACT 298 Query 19597 TCTTAATAGGAGTAGC 19612 ||||| | || ||||| Sbjct 297 TCTTACTTGGTGTAGC 282 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 141322566005520