Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hordeum_20pubiflorum_20[genbank_20GCA_5F000582825.1_202013-08-30] 1,818,420 sequences; 1,425,274,558 total letters Query= NC_006883.2 Length=252401 Score E Sequences producing significant alignments: (Bits) Value seq57095 250 4e-61 seq213450 145 1e-29 seq856698 122 1e-22 seq36335 109 9e-19 seq761979 102 1e-16 >seq57095 Length=8353 Score = 250 bits (276), Expect = 4e-61 Identities = 333/460 (72%), Gaps = 2/460 (0%) Strand=Plus/Minus Query 211612 GGTTGGTTTGGTGTTCTTATGATCCCATGTCTTCTAG-CTGCAACAACATGCTTTATCGT 211670 || ||||| |||||| | |||||||| | ||| | | | ||||| | ||||| | Sbjct 463 GGATGGTTCGGTGTTTTGATGATCCC-TACCTTATTGACCGCAACTTCTGTATTTATTAT 405 Query 211671 AGCATTCATCGCAGCACCTCCCGTTGATATCGACGGAATCCGTGAACCAGTAGCTGGTTC 211730 || |||||||| || ||||| || ||||| || || || ||||| || || ||||||| Sbjct 404 CGCCTTCATCGCTGCCCCTCCAGTAGATATTGATGGTATTCGTGAGCCTGTTTCTGGTTC 345 Query 211731 ATTCATGTATGGTAACAACATCATCTCTGGTGCAGTTGTTCCATCTTCAAACGCAATCGG 211790 || | ||||| ||||| || ||||||||||| || |||| |||| || ||||| Sbjct 344 TTTACTTTATGGAAACAATATTATCTCTGGTGCTATTATTCCTACTTCTGCGGCGATCGG 285 Query 211791 TTTACACTTCTATCCTATCTGGGAAGCAGCAACTCTTGATGAGTGGCTCTACAATGGTGG 211850 || ||||| || || || |||||||| ||| || ||||||||||| | ||||||||||| Sbjct 284 ATTGCACTTTTACCCAATTTGGGAAGCTGCATCTGTTGATGAGTGGTTATACAATGGTGG 225 Query 211851 TCCTTACCAGTTGGTAATCTTCCACTTCCTTATCGGAATCTCAGCATACATGGGAAGACA 211910 |||||| || | | | | |||||| | | || | | || ||||| | | Sbjct 224 TCCTTATGAGCTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTATATGGGTCGTGA 165 Query 211911 GTGGGAACTTTCATACCGTTTAGGTATGCGTCCTTGGATCTGTGTTGCTTATTCAGCACC 211970 |||||||||| | |||| | |||||||| |||||||| |||||| |||||||| || Sbjct 164 GTGGGAACTTAGTTTCCGTCTGGGTATGCGCCCTTGGATTGCTGTTGCATATTCAGCTCC 105 Query 211971 TGTATCAGCAGCTTTCGCTGTATTCCTTGTTTACCCATTCGGTCAGGGTTCATTCTCAGA 212030 ||| |||| ||| ||||| ||| | ||||||| | ||||| || || || || Sbjct 104 TGTTGCAGCTGCTACTGCTGTTTTCTTGATTTACCCTATTGGTCAAGGAAGCTTTTCTGA 45 Query 212031 CGGTATGCCTTTAGGTATATCAGGAACATTCAACTTCATG 212070 |||||||||||||| || || || || |||||||| ||| Sbjct 44 TGGTATGCCTTTAGGAATCTCTGGTACTTTCAACTTTATG 5 >seq213450 Length=3525 Score = 145 bits (160), Expect = 1e-29 Identities = 216/303 (71%), Gaps = 9/303 (3%) Strand=Plus/Plus Query 211987 GCTGTATTCCTTGTTTA-CCCATTCGGTCAGGGTTCATTCTCAGACGGTATGCCTTTAGG 212045 ||||| ||| | |||| |||||| ||||| || || || || |||||||||||||| Sbjct 3223 GCTGTTTTCTTGATTTAGCCCATT-GGTCAAGGAAACTTTTCTGATGGTATGCCTTTAGG 3281 Query 212046 TATATCAGGAACATTCAACTTCATGTTCGTATTCCAAGCAGAACATAACATCCTTATGCA 212105 || || || || |||||||| ||| | ||||| || |||| || |||||| ||||||| Sbjct 3282 AATCTCTGGTACTTTCAACTTTATGATTGTATTTCAGTCAGAGCACAACATCTTTATGCA 3341 Query 212106 CCCATTCCATATGGCAGGTGTTGCAGGTATGTTCGGTGGAGCATTATTCTCTGCTATGCA 212165 | ||| || ||| |||||| || ||| | |||| || | ||||| ||||||||| Sbjct 3342 TCTATTTCACATGTTAGGTGTAGCTGGTGTATTCGTCGGTTCCCTATTCAATGCTATGCA 3401 Query 212166 CGGTTCTCTTGTTACATCTTCACTTATCCGTGAAACCACTGGTTTAGATTCACAGAACTA 212225 ||||| | || || | | ||| | ||||| |||| || || || | Sbjct 3402 TGGTTC-CATGGTAGTT------TGATCAGGGAAACTACTGAAAATGAATCCGCTAATGA 3454 Query 212226 TGGTTACAAGTTCGGACAAGAAGAAGAGACATATAACATCGTTGCTGCACATGGATACTT 212285 |||||||| || || ||||| |||||||| ||||| || || ||||| ||||| || || Sbjct 3455 GGGTTACAAATTTGGTCAAGAGGAAGAGACTTATAATATTGTGGCTGCTCATGGTTATTT 3514 Query 212286 CGG 212288 || Sbjct 3515 TGG 3517 >seq856698 Length=257 Score = 122 bits (134), Expect = 1e-22 Identities = 112/142 (79%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 212411 TAAATGGATTCAACTTCAACCAATCAGTTGTTGATGCATCAGGTAAGGTTGTTCCTACTT 212470 ||||||| ||||| ||||||||||| || |||||| |||| ||| || ||||| Sbjct 1 TAAATGGTTTCAATTTCAACCAATCTGTAGTTGATAGTCAAGGTCGCGTTATTAATACTT 60 Query 212471 GGGGTGATGTTCTTAACAGAGCAAACCTTGGTATGGAAGTTATGCACGAAAGAAATGCAC 212530 ||| |||| | | ||| | || ||||||||||||||||| ||||| ||| | ||||| | Sbjct 61 GGGCTGATATCATCAACCGTGCTAACCTTGGTATGGAAGTAATGCATGAACGTAATGCTC 120 Query 212531 ACAACTTCCCACTTGACTTAGC 212552 |||||||||| || |||||||| Sbjct 121 ACAACTTCCCTCTAGACTTAGC 142 >seq36335 Length=20465 Score = 109 bits (120), Expect = 9e-19 Identities = 104/132 (79%), Gaps = 1/132 (1%) Strand=Plus/Minus Query 211996 CTTG-TTTACCCATTCGGTCAGGGTTCATTCTCAGACGGTATGCCTTTAGGTATATCAGG 212054 |||| ||||||| | ||||| || || || || ||||||| |||||| || || || Sbjct 3528 CTTGATTTACCCTATTGGTCAAGGAAGCTTTTCTGATGGTATGCTTTTAGGAATCTCCGG 3469 Query 212055 AACATTCAACTTCATGTTCGTATTCCAAGCAGAACATAACATCCTTATGCACCCATTCCA 212114 || |||||||| ||| | |||||||| ||||| || |||||||||||||| |||||||| Sbjct 3468 TACTTTCAACTTTATGATTGTATTCCAGGCAGAGCACAACATCCTTATGCATCCATTCCA 3409 Query 212115 TATGGCAGGTGT 212126 ||| |||||| Sbjct 3408 CATGTTAGGTGT 3397 >seq761979 Length=10221 Score = 102 bits (112), Expect = 1e-16 Identities = 190/279 (68%), Gaps = 0/279 (0%) Strand=Plus/Minus Query 211694 TTGATATCGACGGAATCCGTGAACCAGTAGCTGGTTCATTCATGTATGGTAACAACATCA 211753 || |||| || | || | ||||| || || |||| || | |||| ||||| || | Sbjct 480 TTAATATTGATGATATTCATGAACATGTTTCTAGTTCTTTACTTTATGAAAACAATATTA 421 Query 211754 TCTCTGGTGCAGTTGTTCCATCTTCAAACGCAATCGGTTTACACTTCTATCCTATCTGGG 211813 |||||||||| || |||| |||| | | ||| || ||||| || || || || Sbjct 420 TCTCTGGTGCTATTATTCCTACTTCGACGGTGATCAAATTGCACTTTTACCCAATTTGAA 361 Query 211814 AAGCAGCAACTCTTGATGAGTGGCTCTACAATGGTGGTCCTTACCAGTTGGTAATCTTCC 211873 ||| ||| | ||||||||||| | ||||||||||||||||| || | | | || | Sbjct 360 AAGTTGCATCGGTTGATGAGTGGTTATACAATGGTGGTCCTTATGAGCTAATTTTTTTAC 301 Query 211874 ACTTCCTTATCGGAATCTCAGCATACATGGGAAGACAGTGGGAACTTTCATACCGTTTAG 211933 ||||| | | || | | || ||||| | ||| ||||||| | |||| | | Sbjct 300 ACTTCTTACTTGGTGTAGCTTGTTATATGGGTTGTGAGTAGGAACTTAGTTTCCGTCTGG 241 Query 211934 GTATGCGTCCTTGGATCTGTGTTGCTTATTCAGCACCTG 211972 |||||| |||||| || |||||| |||| || |||| Sbjct 240 GTATGCATCCTTGAATTGTTGTTGCATATTGAGGCCCTG 202 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 789199268415200