Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hordeum_20pubiflorum_20[genbank_20GCA_5F000582825.1_202013-08-30] 1,818,420 sequences; 1,425,274,558 total letters Query= NC_006884.2 Length=178249 Score E Sequences producing significant alignments: (Bits) Value seq45179 250 3e-61 seq57095 246 3e-60 seq213450 138 1e-27 seq788035 111 2e-19 seq36335 102 9e-17 seq856698 84.2 2e-11 seq761979 84.2 2e-11 >seq45179 Length=9647 Score = 250 bits (276), Expect = 3e-61 Identities = 523/784 (67%), Gaps = 21/784 (3%) Strand=Plus/Minus Query 172049 AGATCTTNNNCGATGGTTTCAATTAGGTGGACTATGGAACTTTGTAGCATTACATGGAGT 172108 |||| || || |||| ||||||||| || ||||||| |||||||| | || || | Sbjct 9647 AGATTTTACTCGTTGGTGTCAATTAGGCGGTCTATGGACTTTTGTAGCTCTCCACGGGGC 9588 Query 172109 CTTTGGACTCATAGGTTTCATGCTTAGACAGTTTGAGATTGCAGGACTTGTTGGGATACG 172168 |||| ||| |||||||||||| | | || ||||| |||| | |||| | || Sbjct 9587 TTTTGCACTAATAGGTTTCATGTTACGCCAATTTGAACTTGCTCGGTCTGTTCAATTGCG 9528 Query 172169 TCCTTACAACGCACTAGCATTCTCAGCAGTTATTGCAGTATTCACGAGCATCTTTCTAAT 172228 ||||| || ||| | ||||||| | ||||| || || | || || || Sbjct 9527 GCCTTATAATGCAATCTCATTCTCTGGTCCAATTGCTGTTTTTGTTTCTGTATTCCTTAT 9468 Query 172229 ATATCCATTAGGTCAGCATAGTTGGTTCTTCGCACCTTCATTTGGTGTCGCAGCAATCTT 172288 |||||| | || || | |||||||||| || || ||||| || ||||| || || Sbjct 9467 TTATCCACTGGGGCAATCTGGTTGGTTCTTTGCGCCGAGTTTTGGCGTAGCAGCGATATT 9408 Query 172289 TCGTTATATTTTATTCATACAGGGTTTCCACAATATAACTCTTAATCCATTTCATATGAT 172348 ||| | || | ||| | || || || || ||| || | || |||||||||||||| Sbjct 9407 TCGATTCATCCTTTTCTTCCAAGGATTTCATAATTGGACGTTGAACCCATTTCATATGAT 9348 Query 172349 GGGTGTAGCAGGTATACTTGGTGGAGCATTACTATGTGCCATACATGGTGCAACAGTACA 172408 ||| || || || || | || | || | ||||| || || ||||| ||||| ||| | Sbjct 9347 GGGAGTTGCCGGAGTATTAGGCGCGGCTCTGCTATGCGCTATTCATGGAGCAACCGTAGA 9288 Query 172409 GAACACATTGTATGAAGACACATCACAATACACTGAAGGTAAGATTCAATCTACAACTTT 172468 ||||| | | ||| ||| ||| ||| | | || || Sbjct 9287 AAACACTCTATTTGAGGACGG------------TGATGGTGCAAAT---------ACCTT 9249 Query 172469 CAGAGCATTCGATCCTACACAGGAAGAAGAAACTTATAGTATGATTACTGCTAACAGATT 172528 | | || || | || || || | |||||||||||| ||| | ||||||||| | || Sbjct 9248 CCGTGCTTTTAACCCAACTCAAGCTGAAGAAACTTATTCAATGGTCACTGCTAACCGCTT 9189 Query 172529 CTGGTCACAGATATTTGGTATAGCATTTTCAAACAAAAGATTCTTACACTTCCTTATGTT 172588 ||||| || || |||||| | || ||||| || ||| | | ||||| ||| ||||| | Sbjct 9188 TTGGTCCCAAATCTTTGGTGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGCT 9129 Query 172589 GTTCGTACCTGTCATGGGTATGTGGACATCATCTATAGGTATCGTAGGTCTTGCACTTAA 172648 || ||||| |||| ||| | |||| |||| || | || || | || || || Sbjct 9128 ATTTGTACCCGTCACCGGTTTATGGATGAGTGCTATTGGCGTAGTTGGCTTGGCTCTGAA 9069 Query 172649 CCTCAGAGCATACGACTTTGTATCTCAAGAGATAAGAGCAGCAGAAGACCCAGAGTTTGA 172708 | | | || || |||||||| || || || || | ||||| ||||| || || ||||| Sbjct 9068 CTTACGTGCCTATGACTTTGTTTCCCAGGAAATCCGTGCAGCGGAAGATCCTGAATTTGA 9009 Query 172709 AACCTTCTACACTAAGAACATTCTTCTTAATGAAGGTATGAGAGCATGGATGTCATCTGT 172768 || |||||||| || || |||||| | || || ||||| | || |||||| || || Sbjct 9008 GACTTTCTACACCAAAAATATTCTTTTAAACGAGGGTATTCGTGCGTGGATGGCAGCTCA 8949 Query 172769 CGATCAACCCCATGAGAACTTTGTGTTCCCAGAAGAAGTCTTGCCACGAGGCAACGCACT 172828 ||||| || ||||| || || | ||||| || || || | ||||| || ||||| || Sbjct 8948 GGATCAGCCTCATGAAAATCTTATATTCCCTGAGGAGGTTCTACCACGTGGAAACGCTCT 8889 Query 172829 ATAA 172832 ||| Sbjct 8888 TTAA 8885 >seq57095 Length=8353 Score = 246 bits (272), Expect = 3e-60 Identities = 352/493 (71%), Gaps = 2/493 (0%) Strand=Plus/Minus Query 170675 TGGGTAACATCCACTGACAATCGCATCTACGTTGGTTGGTTTGGTGTCTTAATGATCCCA 170734 ||| |||| |||||| ||||| | ||| | || ||||| ||||| || |||||||| Sbjct 496 TGGATAACTAGCACTGAAAATCGTCTTTACATCGGATGGTTCGGTGTTTTGATGATCCC- 438 Query 170735 TGTCTTCTA-ACTGCTGCTGCTTGTTTCATTGTAGCATTCATCGCTGCTCCTCCAGTCGA 170793 | ||| | || || || || || ||| | || ||||||||||| |||||||| || Sbjct 437 TACCTTATTGACCGCAACTTCTGTATTTATTATCGCCTTCATCGCTGCCCCTCCAGTAGA 378 Query 170794 TATCGACGGAATCAGAGAACCAGTTGCGGGTTCTTTCTTATATGGTAACAACATCATCTC 170853 ||| || || || | || || ||| | |||||||| | ||||| ||||| || ||||| Sbjct 377 TATTGATGGTATTCGTGAGCCTGTTTCTGGTTCTTTACTTTATGGAAACAATATTATCTC 318 Query 170854 TGGTGCTGTAGTTCCATCTTCAAACGCAATAGGATTACACTTCTATCCCATCTGGGAAGC 170913 ||||||| | |||| |||| || || ||||| ||||| || || || |||||||| Sbjct 317 TGGTGCTATTATTCCTACTTCTGCGGCGATCGGATTGCACTTTTACCCAATTTGGGAAGC 258 Query 170914 AGCCACTATGGACGAGTGGTTGTACAACGGAGGTCCTTACCAGTTAGTTATTTTCCACTT 170973 || || | || |||||||| ||||| || |||||||| || || || || | ||||| Sbjct 257 TGCATCTGTTGATGAGTGGTTATACAATGGTGGTCCTTATGAGCTAATTGTTCTACACTT 198 Query 170974 CCTTATTGGAATCTCTGCCTACATGGGTAGACAGTGGGAACTATCATACAGACTAGGAAT 171033 | | |||| | || || |||||| | |||||||||| | | | || || || Sbjct 197 CTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACTTAGTTTCCGTCTGGGTAT 138 Query 171034 GAGACCTTGGATATGTGTAGCATACTCAGCACCTGTATCTGCAGCATTTGCAGTATTCCT 171093 | | |||||||| ||| ||||| ||||| ||||| | || || ||| || ||| | Sbjct 137 GCGCCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTGCTGTTTTCTT 78 Query 171094 TGTGTATCCATTCGGTCAGGGTTCATTCTCTGATGGTATGCCACTAGGTATCTCAGGTAC 171153 | || || | ||||| || || |||||||||||||| |||| ||||| ||||| Sbjct 77 GATTTACCCTATTGGTCAAGGAAGCTTTTCTGATGGTATGCCTTTAGGAATCTCTGGTAC 18 Query 171154 GTTCAACTTCATG 171166 |||||||| ||| Sbjct 17 TTTCAACTTTATG 5 Score = 120 bits (132), Expect = 3e-22 Identities = 176/249 (71%), Gaps = 0/249 (0%) Strand=Plus/Plus Query 171807 GATGATTGGTTAAAGAGAGATCGTTTCGTATTCATCGGATGGTCTGGTCTTTTACTTTTA 171866 ||||| |||||| || || |||||||| || | ||||||||||| || || || || Sbjct 8101 GATGACTGGTTACGAAGGGACCGTTTCGTTTTTGTAGGATGGTCTGGCCTATTGCTCTTT 8160 Query 171867 CCTTGTGCTTACCTAGCAATCGGAGGTTGGTTCGTAGGAACTACTTTCGTGACCTCATGG 171926 ||||||||||| | || | || |||||||| ||| || ||||| || || || ||| Sbjct 8161 CCTTGTGCTTATTTCGCTTTAGGGGGTTGGTTTACAGGGACAACTTTTGTAACTTCTTGG 8220 Query 171927 TACACACATGGTATTGCATCCTCATATCTTGAGGGAGCAAACTTTTTAACTGCAGCAGTA 171986 || || ||||| | ||| || ||| | || || || || ||||| |||||||| Sbjct 8221 TATACCCATGGATTGGCAAGTTCCTATTTGGAAGGTTGTAATTTCTTAACCGCAGCAGTT 8280 Query 171987 TCAACACCTGGTGATGCTATGGGTCATAGTCTATTGTTCCTATGGGGACCTGAGGCACAA 172046 || || |||| || | | | || | | ||| | |||||||| || || |||||| Sbjct 8281 TCTACCCCTGCCAATAGTTTAGCACACTCTTTGTTGCTACTATGGGGGCCAGAAGCACAA 8340 Query 172047 GGAGATCTT 172055 |||||| || Sbjct 8341 GGAGATTTT 8349 >seq213450 Length=3525 Score = 138 bits (152), Expect = 1e-27 Identities = 206/292 (71%), Gaps = 8/292 (3%) Strand=Plus/Plus Query 171101 CCATTCGGTCAGGGTTCATTCTCTGATGGTATGCCACTAGGTATCTCAGGTACGTTCAAC 171160 ||||| ||||| || || |||||||||||||| |||| ||||| ||||| |||||| Sbjct 3242 CCATT-GGTCAAGGAAACTTTTCTGATGGTATGCCTTTAGGAATCTCTGGTACTTTCAAC 3300 Query 171161 TTCATGTTCGTGTTCCAAGCAGAACACAACATACTAATGCACCCCTTCCATATGGCAGGT 171220 || ||| | || || || |||| |||||||| | ||||| | || || ||| |||| Sbjct 3301 TTTATGATTGTATTTCAGTCAGAGCACAACATCTTTATGCATCTATTTCACATGTTAGGT 3360 Query 171221 GTAGCAGGTATGTTCGGTGGTAGTCTCTTCAGTGCAATGCACGGTTCTCTAGTGACATCT 171280 ||||| ||| | |||| ||| || |||| ||| ||||| ||||| | | | Sbjct 3361 GTAGCTGGTGTATTCGTCGGTTCCCTATTCAATGCTATGCATGGTTCCATGG-------T 3413 Query 171281 TCTCTAATCAGAGAGACAACTGAGAACGAGAGTCAAAACTACGGCTATAAGTTCGGACAA 171340 | | ||||| || || ||||| || || || | || || || || || ||| Sbjct 3414 AGTTTGATCAGGGAAACTACTGAAAATGAATCCGCTAATGAGGGTTACAAATTTGGTCAA 3473 Query 171341 GAAGAAGAAACATATAACATTGTTGCTGCTCATGGATACTTCGGTAGATTAA 171392 || ||||| || ||||| ||||| ||||||||||| || || || |||||| Sbjct 3474 GAGGAAGAGACTTATAATATTGTGGCTGCTCATGGTTATTTTGGCCGATTAA 3525 >seq788035 Length=1366 Score = 111 bits (122), Expect = 2e-19 Identities = 99/124 (80%), Gaps = 0/124 (0%) Strand=Plus/Plus Query 171323 GGCTATAAGTTCGGACAAGAAGAAGAAACATATAACATTGTTGCTGCTCATGGATACTTC 171382 || || || || || ||||| |||||||| ||||||||||| |||||| |||| || | Sbjct 958 GGTTACAAATTTGGTCAAGAGGAAGAAACTTATAACATTGTGGCTGCTAATGGTTATATT 1017 Query 171383 GGTAGATTAATCTTCCAGTATGCATCATTCAACAACTCTCGTTCATTACACTTCTTCCTC 171442 || |||||||||||| ||||| || |||||||||||||| |||||||||||| | Sbjct 1018 GGCCAATTAATCTTCCAATATGCTAGTTTTAACAACTCTCGTTCTTTACACTTCTTCTTG 1077 Query 171443 GCTG 171446 |||| Sbjct 1078 GCTG 1081 >seq36335 Length=20465 Score = 102 bits (112), Expect = 9e-17 Identities = 86/106 (81%), Gaps = 0/106 (0%) Strand=Plus/Minus Query 171119 TTCTCTGATGGTATGCCACTAGGTATCTCAGGTACGTTCAACTTCATGTTCGTGTTCCAA 171178 || ||||||||||||| |||| ||||| ||||| |||||||| ||| | || ||||| Sbjct 3500 TTTTCTGATGGTATGCTTTTAGGAATCTCCGGTACTTTCAACTTTATGATTGTATTCCAG 3441 Query 171179 GCAGAACACAACATACTAATGCACCCCTTCCATATGGCAGGTGTAG 171224 ||||| |||||||| || ||||| || ||||| ||| |||||||| Sbjct 3440 GCAGAGCACAACATCCTTATGCATCCATTCCACATGTTAGGTGTAG 3395 >seq856698 Length=257 Score = 84.2 bits (92), Expect = 2e-11 Identities = 108/149 (72%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 171509 AACGGATTCAACTTCAACCAATCAGTTGTAGATGCAAACGGAAAGATTGTACCAACATGG 171568 || || ||||| ||||||||||| || || ||| | || || | || ||| Sbjct 3 AATGGTTTCAATTTCAACCAATCTGTAGTTGATAGTCAAGGTCGCGTTATTAATACTTGG 62 Query 171569 GGAGATGTTCTTAACAGAGCAAACCTTGGAATGGAAGTTATGCATGAAAGAAATGCACAC 171628 | ||| | | ||| | || |||||||| |||||||| ||||||||| | ||||| ||| Sbjct 63 GCTGATATCATCAACCGTGCTAACCTTGGTATGGAAGTAATGCATGAACGTAATGCTCAC 122 Query 171629 AACTTCCCACTAGACCTAGCATCTGCTGA 171657 |||||||| |||||| |||| ||| ||| Sbjct 123 AACTTCCCTCTAGACTTAGCTGCTGTTGA 151 >seq761979 Length=10221 Score = 84.2 bits (92), Expect = 2e-11 Identities = 174/259 (67%), Gaps = 0/259 (0%) Strand=Plus/Minus Query 170810 GAACCAGTTGCGGGTTCTTTCTTATATGGTAACAACATCATCTCTGGTGCTGTAGTTCCA 170869 |||| ||| | ||||||| | |||| ||||| || |||||||||||| | |||| Sbjct 460 GAACATGTTTCTAGTTCTTTACTTTATGAAAACAATATTATCTCTGGTGCTATTATTCCT 401 Query 170870 TCTTCAAACGCAATAGGATTACACTTCTATCCCATCTGGGAAGCAGCCACTATGGACGAG 170929 |||| | | || ||| ||||| || || || || ||| || | | || ||| Sbjct 400 ACTTCGACGGTGATCAAATTGCACTTTTACCCAATTTGAAAAGTTGCATCGGTTGATGAG 341 Query 170930 TGGTTGTACAACGGAGGTCCTTACCAGTTAGTTATTTTCCACTTCCTTATTGGAATCTCT 170989 ||||| ||||| || |||||||| || || || |||| |||||| | |||| | || Sbjct 340 TGGTTATACAATGGTGGTCCTTATGAGCTAATTTTTTTACACTTCTTACTTGGTGTAGCT 281 Query 170990 GCCTACATGGGTAGACAGTGGGAACTATCATACAGACTAGGAATGAGACCTTGGATATGT 171049 || |||||| | ||| |||||| | | | || || ||| ||||| || | Sbjct 280 TGTTATATGGGTTGTGAGTAGGAACTTAGTTTCCGTCTGGGTATGCATCCTTGAATTGTT 221 Query 171050 GTAGCATACTCAGCACCTG 171068 || ||||| | || |||| Sbjct 220 GTTGCATATTGAGGCCCTG 202 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 557306447608800