Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hordeum_20pubiflorum_20[genbank_20GCA_5F000582825.1_202013-08-30] 1,818,420 sequences; 1,425,274,558 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq49623 114 3e-20 seq37709 100 7e-16 >seq49623 Length=10526 Score = 114 bits (126), Expect = 3e-20 Identities = 162/221 (73%), Gaps = 5/221 (2%) Strand=Plus/Plus Query 363622 ATGAAGGACGATTCCATCGAGGGTATCTTTGACACACTTAAGAATTGTGCTCTTATTTCC 363681 ||||| || ||| ||||||||| |||| ||| || || ||| | |||||| | || | Sbjct 3839 ATGAAAGATGATAGCATCGAGGGAATCTATGATACTCTGAAGGAGTGTGCTGTCATAAGC 3898 Query 363682 AAGAATGCAGGCGGAATTGGTGTATCGATCCACAATGTTCGTGC-ACAGAACAGTTACAT 363740 || ||| || ||||||||||| || | ||||| ||||||| || | |||||||| Sbjct 3899 AAATCTGCTGGAGGAATTGGTGTCTCTGTTCACAACATTCGTGCTACTG-GGAGTTACAT 3957 Query 363741 TCGCGGCAC-AGGGGGATACTCGAATGGGCTGGTTCCCATGCTTCGTGTGTTTGACAATA 363799 ||| || || | |||| | || |||||| | ||||||||| | ||||| || | ||| Sbjct 3958 TCGAGGGACAAATGGGACA-TCCAATGGGATTGTTCCCATGTTACGTGTCTTCAATGATA 4016 Query 363800 CTGCGAGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGGG 363840 |||| | ||||| || || || ||||| ||| | |||||| Sbjct 4017 CTGCTCGTTACGTAGATCAAGGCGGAGGCAAGAG-AAAGGG 4056 >seq37709 Length=12305 Score = 100 bits (110), Expect = 7e-16 Identities = 164/234 (70%), Gaps = 2/234 (1%) Strand=Plus/Plus Query 363607 TGCTTTCTTCTAAAAATGAAGGACGATTCCATCGAGGGTATCTTTGACACACTTAAGAAT 363666 ||||||||| | ||||| |||||| ||| ||||| || | ||| || || | | Sbjct 6912 TGCTTTCTTGTCTGCATGAAAGACGATAGCATTGAGGGAATTTATGATACTCTCTCGGAA 6971 Query 363667 TGTGCTCTTATTTCCAAGAATGCAGGCGGAATTGGTGTATCGATCCACAATGTTCGTGC- 363725 || ||| || ||| ||| || || |||||||| || || |||||||| || || Sbjct 6972 TGCGCTTCCATAAGCAAATCTGCTGGAGGGATTGGTGTCTCAATTCACAATGTCCGGGCT 7031 Query 363726 ACAGAACAGTTACATTCGCGGCACAGGGGGATACTCGAATGGGCTGGTTCCCATGCTTCG 363785 || | |||||||||||| || ||| ||| || ||||| | ||||||||||| || Sbjct 7032 ACTGG-CAGTTACATTCGTGGAACAAATGGAACTTCTAATGGAATTGTTCCCATGCTACG 7090 Query 363786 TGTGTTTGACAATACTGCGAGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGG 363839 ||| || | | ||||| | || || || || |||||||| ||| | ||||| Sbjct 7091 TGTTTTCAATGACACTGCACGCTATGTTGATCAAGGTGGAGGCAAGAGAAAAGG 7144 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1272987408004440