Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hordeum_20pubiflorum_20[genbank_20GCA_5F000582825.1_202013-08-30] 1,818,420 sequences; 1,425,274,558 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq746917 131 1e-25 seq593927 131 1e-25 seq455753 131 1e-25 seq57086 131 1e-25 seq713217 127 1e-24 seq320143 123 2e-23 seq598963 122 6e-23 seq44805 122 6e-23 seq1459619 120 2e-22 seq199862 116 2e-21 seq36581 116 2e-21 seq1314967 104 2e-17 seq1085502 95.1 8e-15 seq752483 93.3 3e-14 seq10984 86.0 4e-12 seq8128 86.0 4e-12 >seq746917 Length=200 Score = 131 bits (144), Expect = 1e-25 Identities = 86/95 (91%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||||||||||||||||||||||||||||| |||||||| ||||| || |||||||| Sbjct 67 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTGGATAGTAGGTAGGGACAGTGGGAATCTCGT 126 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||||||||||||||||||| Sbjct 127 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 161 >seq593927 Length=236 Score = 131 bits (144), Expect = 1e-25 Identities = 86/95 (91%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||||||||||||||||||||||||||||| ||||||||| |||| || |||||||| Sbjct 118 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTGGATAGTAGACAGGGACAGTGGGAATCTCGT 59 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||||||||||||||||||| Sbjct 58 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 24 >seq455753 Length=215 Score = 131 bits (144), Expect = 1e-25 Identities = 86/95 (91%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||||||||||||||||||||||||||||| ||||||||| |||| || |||||||| Sbjct 67 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTGGATAGTAGACAGGGAGAGTGGGAATCTCGT 126 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||||||||||||||||||| Sbjct 127 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 161 >seq57086 Length=3907 Score = 131 bits (144), Expect = 1e-25 Identities = 86/95 (91%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||||||||||||||||||||||||||||| ||||||||| |||| || |||||||| Sbjct 1231 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTGGATAGTAGACAGGGACAGTGGGAATCTCGT 1290 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||||||||||||||||||| Sbjct 1291 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 1325 Score = 96.9 bits (106), Expect = 2e-15 Identities = 67/76 (88%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||| |||||||| ||||||| ||||||||| |||||||||||||||||||||||| | Sbjct 3220 CTCTCTTTTCAAAGTCCTTTTCATCTTTCCCTCGCGGTACTTGTTCGCTATCGGTCTCTC 3279 Query 20007 GGTAATATTTAGCCTT 20022 | ||||||||||| Sbjct 3280 GCCTGTATTTAGCCTT 3295 >seq713217 Length=260 Score = 127 bits (140), Expect = 1e-24 Identities = 85/95 (89%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||||||||||||||||||||||||||||| | ||||||| |||| || |||||||| Sbjct 59 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTGGGTAGTAGACAGGGACAGTGGGAATCTCGT 118 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||||||||||||||||||| Sbjct 119 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 153 >seq320143 Length=414 Score = 123 bits (136), Expect = 2e-23 Identities = 83/93 (89%), Gaps = 5/93 (5%) Strand=Plus/Minus Query 25904 GCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGTTA 25958 |||| |||||||||||||||||||||| ||||||||| |||| || |||||||||| Sbjct 116 GCCCTTTCCCTTGGCTGTGGTTTCGCTGGATAGTAGACAGGGACAGTGGGAATCTCGTTA 57 Query 25959 ATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||| |||||||||||||||||||||||||||| Sbjct 56 ATCCATTCATGCGCGTCACTAATTAGATGACGA 24 >seq598963 Length=214 Score = 122 bits (134), Expect = 6e-23 Identities = 84/95 (88%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||| || ||||||| | |||| || |||||||| Sbjct 81 AAGCCCGTTCCCTTGGCTGTGGTTTCTCTGGATAGTAAACAGGGACAGTGGGAATCTCGT 140 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||||||||||||||||||| Sbjct 141 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 175 >seq44805 Length=2456 Score = 122 bits (134), Expect = 6e-23 Identities = 84/95 (88%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||| ||||||||||| | | |||||||||||||||||||||||| || |||||||| Sbjct 2323 AAGTCCGTTCCCTTGCCAGCGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGT 2382 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||||||||||||||||||| Sbjct 2383 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 2417 >seq1459619 Length=473 Score = 120 bits (132), Expect = 2e-22 Identities = 81/91 (89%), Gaps = 5/91 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||||||||||||||||||||||||||||| ||||||||| |||| || |||||||| Sbjct 3 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTGGATAGTAGACAGGGACAGTGGGAATCTCGT 62 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATG 25987 |||||| ||||||||| |||||||||||||| Sbjct 63 TAATCCATTCATGCGCATCACTAATTAGATG 93 >seq199862 Length=435 Score = 116 bits (128), Expect = 2e-21 Identities = 84/96 (88%), Gaps = 6/96 (6%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||| |||||| ||||||||| |||| || |||||||| Sbjct 129 AAGCCCGTTCCCTTGGCTGTGGATTCGCTGGATAGTAGACAGGGACAGTGGGAATCTCGT 188 Query 25957 TAATCC-TTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| || ||||||||||||||||||||||||| Sbjct 189 TAATCCAATTAATGCGCGTCACTAATTAGATGACGA 224 >seq36581 Length=4089 Score = 116 bits (128), Expect = 2e-21 Identities = 72/77 (94%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 ||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||| Sbjct 1913 CTCTCTCTTCAAAGTTCTTTTCACCTTTCCCTCACGGTACTTGTGTGCTATCGGTCTCGT 1854 Query 20007 GGTAATATTTAGCCTTA 20023 ||| ||||||||||||| Sbjct 1853 GGTCATATTTAGCCTTA 1837 >seq1314967 Length=490 Score = 104 bits (114), Expect = 2e-17 Identities = 72/82 (88%), Gaps = 5/82 (6%) Strand=Plus/Minus Query 25915 TGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGTTAATCCTTTCATG 25969 |||||||||||||||| ||||||||| |||| || |||||||||||||| || ||| Sbjct 490 TGGCTGTGGTTTCGCTGGATAGTAGACAGGGACAGTGGGAATCTCGTTAATCCATTGATG 431 Query 25970 CGCGTCACTAATTAGATGACGA 25991 |||||||||||||||||||||| Sbjct 430 CGCGTCACTAATTAGATGACGA 409 >seq1085502 Length=495 Score = 95.1 bits (104), Expect = 8e-15 Identities = 66/75 (88%), Gaps = 5/75 (7%) Strand=Plus/Minus Query 25922 GGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGTTAATCCTTTCATGCGCGTCA 25976 ||||||||| ||||||||| |||| || |||||||||||||| ||||||||||||| Sbjct 75 GGTTTCGCTGGATAGTAGACAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCA 16 Query 25977 CTAATTAGATGACGA 25991 ||||||||||||||| Sbjct 15 CTAATTAGATGACGA 1 >seq752483 Length=2742 Score = 93.3 bits (102), Expect = 3e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 38109 ACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTCGTCT 38168 ||||| |||||||| ||| || || |||||||| |||| ||| ||| |||| || Sbjct 1420 ACCAAGTGAAGAGTAGACTCTTTCTGGATATTGTAGTCAGCCAACGTACGACCGTCCTCG 1361 Query 38169 AATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCATA 38228 | || ||||||||||| || || | || || || | |||| || || || ||| Sbjct 1360 AGCTGCTTTCCGGCAAAGATGAGCCTCTGCTGGTCAGGCGGGATACCCTCCTTATCCTGG 1301 Query 38229 ATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGTTTTA 38288 || || ||||||||| | | ||| || ||| ||||| |||| || || || || Sbjct 1300 ATCTTGGCCTTCACATTATCAATAGTGTCAGAACTCTCAACCTCTAGGGTTATGGTCTTC 1241 Query 38289 CCCGTCAAGGTTTTCACGAATATCTGCAT 38317 || || | ||| ||||| || |||||||| Sbjct 1240 CCAGTGAGGGTCTTCACAAAAATCTGCAT 1212 >seq10984 Length=1305 Score = 86.0 bits (94), Expect = 4e-12 Identities = 65/77 (84%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 ||||||||||||||| |||| |||||||||||||||||||||||| ||||||| | | | Sbjct 856 CTCTCTCTTCAAAGTACTTTGCAACTTTCCCTCACGGTACTTGTTTGCTATCGATATTAC 915 Query 20007 GGTAATATTTAGCCTTA 20023 | ||||||| |||| Sbjct 916 CATCGTATTTAGTCTTA 932 >seq8128 Length=3827 Score = 86.0 bits (94), Expect = 4e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 38091 CCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGAC 38150 ||||| | || || | ||||| ||| ||||| |||||| ||||| |||||||| | | Sbjct 3518 CCACCACGCAGGCGGAGCACCAGATGGAGAGTAGACTCCTTCTGAATGTTGTAATCCGCC 3459 Query 38151 AAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGG 38210 | | || |||| || | || || || ||||| || | | || || || | ||| Sbjct 3458 AGAGTGCGACCGTCCTCAAGCTGCTTGCCCGCAAAGATCAACCTCTGCTGGTCCGGAGGG 3399 Query 38211 ACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACT 38270 | ||| || |||||| || || ||||||||| | | ||||| | || || Sbjct 3398 ATGCCCTCCTTGTCCTGGATCTTCGCCTTCACATTGTCAATGGTATCCGAAGACTCGACC 3339 Query 38271 TCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 || | ||||| || || || || | |||||||||||| |||||||| Sbjct 3338 TCCAGAGTAATGGTCTTGCCGGTGAGGGTTTTCACGAAGATCTGCAT 3292 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 327524102247020