Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hordeum_20pubiflorum_20[genbank_20GCA_5F000582825.1_202013-08-30] 1,818,420 sequences; 1,425,274,558 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq49623 98.7 1e-15 >seq49623 Length=10526 Score = 98.7 bits (108), Expect = 1e-15 Identities = 155/222 (70%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 63226 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 63285 ||| || ||||||| ||| | ||| || | ||| | || | ||||| |||| ||| || Sbjct 4042 TCCGCCTTGATCTACGTAACGAGCAGTATCATTGAAGACACGTAACATGGGAACAATCCC 3983 Query 63286 ATTGGATGTACCATTGGTCCCTGAGATATAGCTTCCACTGGCACGAATATTACTAATTGA 63345 ||||||||| ||||| |||||| || || || ||| | |||||||| || || || Sbjct 3982 ATTGGATGTCCCATTTGTCCCTCGAATGTAACTCCCAGTAGCACGAATGTTGTGAACAGA 3923 Query 63346 TAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGAT 63405 | ||| ||||| || || ||| || | || || || | ||||||||||| Sbjct 3922 GACACCAATTCCTCCAGCAGATTTGCTTATGACAGCACACTCCTTCAGAGTATCATAGAT 3863 Query 63406 GCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCT 63447 ||||| || |||||||| ||||| | || |||||||| Sbjct 3862 TCCCTCGATGCTATCATCTTTCATGCAGATAAGGAAACAGCT 3821 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 619229386232000