Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hordeum_20pubiflorum_20[genbank_20GCA_5F000582825.1_202013-08-30] 1,818,420 sequences; 1,425,274,558 total letters Query= NC_008296.2 Length=177300 Score E Sequences producing significant alignments: (Bits) Value seq45179 444 6e-120 seq57095 223 4e-53 seq155648 181 1e-40 seq213450 145 8e-30 seq856698 138 1e-27 seq79754 122 1e-22 seq352821 107 2e-18 seq788035 105 7e-18 seq159272 102 9e-17 seq36335 87.8 2e-12 >seq45179 Length=9647 Score = 444 bits (492), Expect = 6e-120 Identities = 546/746 (73%), Gaps = 0/746 (0%) Strand=Plus/Minus Query 167567 TGGTGCCAGCTTGGGGGACTCTGGGCTTTTGTGGCGCTCCACGGAGCCTTTGCTCTCATA 167626 ||||| || | || || || ||| ||||||| || |||||||| || ||||| || ||| Sbjct 9634 TGGTGTCAATTAGGCGGTCTATGGACTTTTGTAGCTCTCCACGGGGCTTTTGCACTAATA 9575 Query 167627 GGATTTATGCTTCGGCAATTTGAGATAAGTAGACTAGTAGGTATCCGTCCTTACAATGCG 167686 || || ||| | || |||||||| | | | || | || ||||| ||||| Sbjct 9574 GGTTTCATGTTACGCCAATTTGAACTTGCTCGGTCTGTTCAATTGCGGCCTTATAATGCA 9515 Query 167687 ATTGCTTTTTCTGGTCCGATTGCTGTCTTTGTGTCTGTTTTTCTCATCTATCCTCTCGGA 167746 || | || |||||||| |||||||| ||||| ||||| || || || ||||| || || Sbjct 9514 ATCTCATTCTCTGGTCCAATTGCTGTTTTTGTTTCTGTATTCCTTATTTATCCACTGGGG 9455 Query 167747 CAGTCCAGTTGGTTCTTTGCACCGTCGTTTGGTGTTGCAGCGATATTTAGATTCCTACTA 167806 || || ||||||||||||| ||| ||||| || |||||||||||| ||||| | || Sbjct 9454 CAATCTGGTTGGTTCTTTGCGCCGAGTTTTGGCGTAGCAGCGATATTTCGATTCATCCTT 9395 Query 167807 TTCCTACAGGGTTTCCATAACTGGACGCTCAACCCTTTCCATATGATGGGAGTTGCTGGT 167866 ||| | || || || ||||| |||||| | ||||| || ||||||||||||||||| || Sbjct 9394 TTCTTCCAAGGATTTCATAATTGGACGTTGAACCCATTTCATATGATGGGAGTTGCCGGA 9335 Query 167867 ATCCTAGGCGGTGCATTGCTTTCTGCAATCCATGGTGTTACAGTAGAGAATACTCTGTAT 167926 | |||||| || |||| | || || ||||| | || ||||| || ||||| | | Sbjct 9334 GTATTAGGCGCGGCTCTGCTATGCGCTATTCATGGAGCAACCGTAGAAAACACTCTATTT 9275 Query 167927 GAAGATGGTGAGCAAGCAAACACTTTCAAAGCATTTGATACGACTCAGGAAGAGGAAACT 167986 || || ||||| ||||| || ||| || ||| | | ||||| | || |||||| Sbjct 9274 GAGGACGGTGATGGTGCAAATACCTTCCGTGCTTTTAACCCAACTCAAGCTGAAGAAACT 9215 Query 167987 TATTCCATGGTCACTGCTAACCGATTCTGGTCTCAAATTTTTGGTATTGCTTTCAGCAAT 168046 ||||| ||||||||||||||||| || ||||| ||||| |||||| ||||||| |||| Sbjct 9214 TATTCAATGGTCACTGCTAACCGCTTTTGGTCCCAAATCTTTGGTGTTGCTTTTTCCAAT 9155 Query 168047 AAGCGTTGGTTGCACTTCTTTATGCTTTTCGTTCCTGTCATGGGACTTTGGACAAGTTCT 168106 || |||||||| || ||||||||||| || || || |||| || | |||| ||| || Sbjct 9154 AAACGTTGGTTACATTTCTTTATGCTATTTGTACCCGTCACCGGTTTATGGATGAGTGCT 9095 Query 168107 ATTGGTATCATCGGTCTCGCACTTAATCTTCGTGCTTATGACTTTGTGTCTCAGGAAGTT 168166 ||||| | | || | || || || | ||||| ||||||||||| || |||||| | Sbjct 9094 ATTGGCGTAGTTGGCTTGGCTCTGAACTTACGTGCCTATGACTTTGTTTCCCAGGAAATC 9035 Query 168167 AGAGCAGCAGAGGATCCAGAGTTTGAAACTTTCTATACGAAAAACATCCTCCTCAATGAA 168226 | ||||| || ||||| || ||||| |||||||| || ||||| || || | || || Sbjct 9034 CGTGCAGCGGAAGATCCTGAATTTGAGACTTTCTACACCAAAAATATTCTTTTAAACGAG 8975 Query 168227 GGACTCCGTGCCTGGATGGCTCCAGTAGACCAACCACATGAAAACTTTGTATTCCCAGAA 168286 || | ||||| |||||||| | || || || |||||||| || ||||||| || Sbjct 8974 GGTATTCGTGCGTGGATGGCAGCTCAGGATCAGCCTCATGAAAATCTTATATTCCCTGAG 8915 Query 168287 GAAGTATTGCCAAGAGGCAACGCTCT 168312 || || | ||| | || |||||||| Sbjct 8914 GAGGTTCTACCACGTGGAAACGCTCT 8889 >seq57095 Length=8353 Score = 223 bits (246), Expect = 4e-53 Identities = 355/507 (70%), Gaps = 2/507 (0%) Strand=Plus/Minus Query 166053 CTTCTGCGAATGGGTTACCTCTACCAACAACCGTCTTTATGTTGGTTGGTTTGGCACACT 166112 ||||||| | ||| | || || | || |||||||| | || ||||| || | Sbjct 506 CTTCTGCAACTGGATAACTAGCACTGAAAATCGTCTTTACATCGGATGGTTCGGTGTTTT 447 Query 166113 GATGATTCCAACTCTGTTGGCAGCAACCATCTGT-TTCATCGTCGCTTTCGTAGCGGCAC 166171 |||||| || || | ||| | ||||| ||||| || || |||| ||| | || || | Sbjct 446 GATGATCCCTACCTTATTGACCGCAACT-TCTGTATTTATTATCGCCTTCATCGCTGCCC 388 Query 166172 CTCCTGTCGATATCGATGGGATCCGTGAGCCCGTAGCAGGCTCTCTAATGTATGGTAACA 166231 |||| || ||||| ||||| || |||||||| || | || ||| || | ||||| |||| Sbjct 387 CTCCAGTAGATATTGATGGTATTCGTGAGCCTGTTTCTGGTTCTTTACTTTATGGAAACA 328 Query 166232 ACATCATCTCTGGTGCTGTTGTCCCCTCCTCCAACGCAATTGGTCTTCACTTCTATCCCA 166291 | || |||||||||||| || | || | || || || || | ||||| || || | Sbjct 327 ATATTATCTCTGGTGCTATTATTCCTACTTCTGCGGCGATCGGATTGCACTTTTACCCAA 268 Query 166292 TCTGGGAAGCAGCATCACTTGATGAATGGCTTTATAACGGTGGTCCTTTCCAGCTCGTAG 166351 | |||||||| ||||| ||||||| ||| | || || |||||||||| |||| | | Sbjct 267 TTTGGGAAGCTGCATCTGTTGATGAGTGGTTATACAATGGTGGTCCTTATGAGCTAATTG 208 Query 166352 TCTTCCACTTCCTCATCGGCATCTATGCCTACATGGGTCGTGAATGGGAATTGTCTTACC 166411 | | |||||| | | || | | || ||||||||||| |||||| | || || Sbjct 207 TTCTACACTTCTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACTTAGTTTCC 148 Query 166412 GCCTCGGTATGCGTCCTTGGATTTGCGTAGCATACTCTGCACCTGTTGCAGCAGCATCCG 166471 | || |||||||| ||||||||| || ||||| || || ||||||||||| || | | Sbjct 147 GTCTGGGTATGCGCCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTG 88 Query 166472 CAGTCTTCCTGGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGACGCAATGCCCCTGGGTA 166531 | || ||| || | || ||| | |||||||| || ||||| | ||||| | || | Sbjct 87 CTGTTTTCTTGATTTACCCTATTGGTCAAGGAAGCTTTTCTGATGGTATGCCTTTAGGAA 28 Query 166532 TCAGTGGCACCTTCAACTACATGCTTG 166558 || ||| || ||||||| ||| ||| Sbjct 27 TCTCTGGTACTTTCAACTTTATGATTG 1 Score = 95.1 bits (104), Expect = 1e-14 Identities = 171/250 (68%), Gaps = 0/250 (0%) Strand=Plus/Plus Query 167310 TGGATGACTGGCTTAAACGCGACCGCTTTGTCTTTGTGGGCTGGTCTGGATTACTTCTTT 167369 ||||||||||| | | | ||||| || || ||||| || |||||||| || | || | Sbjct 8099 TGGATGACTGGTTACGAAGGGACCGTTTCGTTTTTGTAGGATGGTCTGGCCTATTGCTCT 8158 Query 167370 TTCCCACTGCTTATCTGGCAATTGGTGGCTGGCTTACTGGCACGACGTTTGTTACGAGCT 167429 |||| ||||||| | || | || || ||| |||| || || || ||||| || | Sbjct 8159 TTCCTTGTGCTTATTTCGCTTTAGGGGGTTGGTTTACAGGGACAACTTTTGTAACTTCTT 8218 Query 167430 GGTATACCCACGGGTTGGCGTCTAGTTACCTTGAGGGTGCTAATTTTCTCACGGCAGCAG 167489 |||||||||| || ||||| | || | || ||| |||||| | || ||||||| Sbjct 8219 GGTATACCCATGGATTGGCAAGTTCCTATTTGGAAGGTTGTAATTTCTTAACCGCAGCAG 8278 Query 167490 TGTCAACTCCTGCTGACGCTATGGGTCATTCTCTTCTTCTACTTTGGGGTCCTGAGTCTC 167549 | || || ||||| | | | | || ||| | | ||||| ||||| || || | | Sbjct 8279 TTTCTACCCCTGCCAATAGTTTAGCACACTCTTTGTTGCTACTATGGGGGCCAGAAGCAC 8338 Query 167550 AGGGGGATTT 167559 | || ||||| Sbjct 8339 AAGGAGATTT 8348 >seq155648 Length=2022 Score = 181 bits (200), Expect = 1e-40 Identities = 226/310 (73%), Gaps = 0/310 (0%) Strand=Plus/Minus Query 167696 TCTGGTCCGATTGCTGTCTTTGTGTCTGTTTTTCTCATCTATCCTCTCGGACAGTCCAGT 167755 |||||||| |||||| | ||||| | || || || || ||||| | || || || || Sbjct 2022 TCTGGTCCAATTGCTATTTTTGTTTACGTATTCCTTATTTATCCACCGGGGCAATCTGGT 1963 Query 167756 TGGTTCTTTGCACCGTCGTTTGGTGTTGCAGCGATATTTAGATTCCTACTATTCCTACAG 167815 ||||||||||| ||| ||||| || ||| ||||||| ||||| | || ||| | || Sbjct 1962 TGGTTCTTTGCGCCGAGTTTTGGCGTGGCAACGATATTGCGATTCATCCTTTTCTTCCAA 1903 Query 167816 GGTTTCCATAACTGGACGCTCAACCCTTTCCATATGATGGGAGTTGCTGGTATCCTAGGC 167875 || || ||||| |||||| | ||||| || ||||||||||||||||| || | ||||| Sbjct 1902 GGATTTCATAATTGGACGTTGAACCCATTTCATATGATGGGAGTTGCCGGAGTATTAGGC 1843 Query 167876 GGTGCATTGCTTTCTGCAATCCATGGTGTTACAGTAGAGAATACTCTGTATGAAGATGGT 167935 | | ||| | || || ||||| | || ||||| || ||||| | ||| || ||| Sbjct 1842 GCGACTCTGCCATGCGCTATTCATGGAGCAACCGTAGAAAACACTCTATTTGAGGACGGT 1783 Query 167936 GAGCAAGCAAACACTTTCAAAGCATTTGATACGACTCAGGAAGAGGAAACTTATTCCATG 167995 || ||||| || ||| || ||| | | ||||| | || ||||||||||| ||| Sbjct 1782 GATGGTGCAAATACCTTCCGTGCTTTTAACCCAACTCAAGCTGAAGAAACTTATTCAATG 1723 Query 167996 GTCACTGCTA 168005 |||||||||| Sbjct 1722 GTCACTGCTA 1713 >seq213450 Length=3525 Score = 145 bits (160), Expect = 8e-30 Identities = 216/306 (71%), Gaps = 9/306 (3%) Strand=Plus/Plus Query 166471 GCAGTCTTCCTGGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGACGCAATGCCCCTGGGT 166530 || || ||| || | || || | |||||||| || ||||| | ||||| | || Sbjct 3223 GCTGTTTTCTTGATTTAGCCCATTGGTCAAGGAAACTTTTCTGATGGTATGCCTTTAGGA 3282 Query 166531 ATCAGTGGCACCTTCAACTACATGCTTGTCTTCCAAGCAGAGCACAACATCCTCATGCAC 166590 ||| ||| || ||||||| ||| |||| || || |||||||||||||| | ||||| Sbjct 3283 ATCTCTGGTACTTTCAACTTTATGATTGTATTTCAGTCAGAGCACAACATCTTTATGCAT 3342 Query 166591 CCCTTCCATATGCTGGGTGTAGCAGGTGTATTCGGTGGGTCACTTTTCTCGGCAATGCAC 166650 | || || ||| | |||||||| |||||||||| || || || ||| || ||||| Sbjct 3343 CTATTTCACATGTTAGGTGTAGCTGGTGTATTCGTCGGTTCCCTATTCAATGCTATGCA- 3401 Query 166651 GGCAGTCTCGTTACTTCCTCGCTCG-TCCGTGAGACCACTGAAACTGAGTCTCAAAACTA 166709 | ||| | | | | | | || | || || ||||||| ||| || || | Sbjct 3402 -------TGGTTCCATGGTAGTTTGATCAGGGAAACTACTGAAAATGAATCCGCTAATGA 3454 Query 166710 TGGTTACAAGTTTGGTCAAGAAGAAGAGACCTACAACATCGTGGCTGCTCATGGTTACTT 166769 |||||||| ||||||||||| |||||||| || || || ||||||||||||||||| || Sbjct 3455 GGGTTACAAATTTGGTCAAGAGGAAGAGACTTATAATATTGTGGCTGCTCATGGTTATTT 3514 Query 166770 CGGTCG 166775 || || Sbjct 3515 TGGCCG 3520 >seq856698 Length=257 Score = 138 bits (152), Expect = 1e-27 Identities = 120/149 (81%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 166897 AACGGTTTCAACTTCAACCAGTCCATCATCGATGGTCAGGGTCGTGTGCTCAACACTTGG 166956 || |||||||| |||||||| || | | ||| |||| ||||| || | || |||||| Sbjct 3 AATGGTTTCAATTTCAACCAATCTGTAGTTGATAGTCAAGGTCGCGTTATTAATACTTGG 62 Query 166957 GCAGATGTCCTCAACCGTGCTGGTCTGGGTATGGAAGTAATGCACGAGCGTAATGCTCAC 167016 || ||| || ||||||||||| || ||||||||||||||||| || |||||||||||| Sbjct 63 GCTGATATCATCAACCGTGCTAACCTTGGTATGGAAGTAATGCATGAACGTAATGCTCAC 122 Query 167017 AACTTCCCTCTGGATCTTGCTGCTGCTGA 167045 ||||||||||| || | ||||||| ||| Sbjct 123 AACTTCCCTCTAGACTTAGCTGCTGTTGA 151 >seq79754 Length=5746 Score = 122 bits (134), Expect = 1e-22 Identities = 133/177 (75%), Gaps = 0/177 (0%) Strand=Plus/Plus Query 167934 GTGAGCAAGCAAACACTTTCAAAGCATTTGATACGACTCAGGAAGAGGAAACTTATTCCA 167993 |||| | ||||| || ||| || ||| | | ||||| | || ||||||||||| | Sbjct 4785 GTGATGATGCAAATACCTTCCGTGCTTTTAACCCAACTCAAGCTGAAGAAACTTATTCAA 4844 Query 167994 TGGTCACTGCTAACCGATTCTGGTCTCAAATTTTTGGTATTGCTTTCAGCAATAAGCGTT 168053 |||||||||||||||| || ||||| ||||| |||| | ||||||| |||||| ||| Sbjct 4845 TGGTCACTGCTAACCGTTTTTGGTCCCAAATCTTTGATGTTGCTTTTTCCAATAAATGTT 4904 Query 168054 GGTTGCACTTCTTTATGCTTTTCGTTCCTGTCATGGGACTTTGGACAAGTTCTATTG 168110 |||| || ||||||||||| || || | |||| || | |||| ||| |||||| Sbjct 4905 GGTTACATTTCTTTATGCTATTTGTACTCGTCACTGGTTTATGGATGAGTGCTATTG 4961 >seq352821 Length=202 Score = 107 bits (118), Expect = 2e-18 Identities = 142/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 168095 TGGACAAGTTCTATTGGTATCATCGGTCTCGCACTTAATCTTCGTGCTTATGACTTTGTG 168154 |||| ||| ||||||| | | || | || || || | ||||| ||||||||||| Sbjct 6 TGGATGAGTGCTATTGGCTTAGTTGGCTTGGCTCTGAACTTACGTGCCTATGACTTTGTT 65 Query 168155 TCTCAGGAAGTTAGAGCAGCAGAGGATCCAGAGTTTGAAACTTTCTATACGAAAAACATC 168214 || |||||| | | ||||| || ||||| || |||||||||||||| || ||||| || Sbjct 66 TCCCAGGAAATCCGTGCAGCGGAAGATCCTGAATTTGAAACTTTCTACACCAAAAATATT 125 Query 168215 CTCCTCAATGAAGGACTCCGTGCCTGGATGGCTCCAGTAGACCAACCACATGAAAACTTT 168274 || | || || || | ||||| |||||||| | || || || |||||||| || Sbjct 126 CTTTTAAACGAGGGTATTCGTGCGTGGATGGCAGCTCAGGATCAGCCTCATGAAAATCTT 185 Query 168275 GTATTCCCAGAAGAAGT 168291 ||||||| || || || Sbjct 186 ATATTCCCTGAGGAGGT 202 >seq788035 Length=1366 Score = 105 bits (116), Expect = 7e-18 Identities = 99/126 (79%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 166710 TGGTTACAAGTTTGGTCAAGAAGAAGAGACCTACAACATCGTGGCTGCTCATGGTTACTT 166769 ||||||||| ||||||||||| ||||| || || ||||| ||||||||| ||||||| | Sbjct 957 TGGTTACAAATTTGGTCAAGAGGAAGAAACTTATAACATTGTGGCTGCTAATGGTTATAT 1016 Query 166770 CGGTCGCCTGATCTTCCAATACGCTTCCTTCAACAACTCTCGCTCGCTGCACTTCTTCCT 166829 || | | ||||||||||| ||| || ||||||||||| || | ||||||||| | Sbjct 1017 TGGCCAATTAATCTTCCAATATGCTAGTTTTAACAACTCTCGTTCTTTACACTTCTTCTT 1076 Query 166830 CGCAGC 166835 || || Sbjct 1077 GGCTGC 1082 >seq159272 Length=944 Score = 102 bits (112), Expect = 9e-17 Identities = 122/166 (73%), Gaps = 0/166 (0%) Strand=Plus/Minus Query 167696 TCTGGTCCGATTGCTGTCTTTGTGTCTGTTTTTCTCATCTATCCTCTCGGACAGTCCAGT 167755 ||||| || |||| | ||||| | ||| || || || || || || || || || || Sbjct 303 TCTGGCCCAATTGTTCCTTTTGTTTTTGTATTCCTTATTTACCCACTTGGGCAATCTGGT 244 Query 167756 TGGTTCTTTGCACCGTCGTTTGGTGTTGCAGCGATATTTAGATTCCTACTATTCCTACAG 167815 |||||| ||||| | ||||| | |||||||||||| ||||| | || ||| | || Sbjct 243 TGGTTCATTGCATCTAGTTTTGGCATAGCAGCGATATTTCGATTCATCCTTTTCTTCCAA 184 Query 167816 GGTTTCCATAACTGGACGCTCAACCCTTTCCATATGATGGGAGTTG 167861 || || ||||| ||||| | ||||| || |||||||||||| ||| Sbjct 183 GGATTTCATAATTGGACATTGAACCCATTTCATATGATGGGATTTG 138 >seq36335 Length=20465 Score = 87.8 bits (96), Expect = 2e-12 Identities = 101/136 (74%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 166477 TTCCTGGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGACGCAATGCCCCTGGGTATCAGT 166536 ||| || | || ||| | |||||||| || ||||| | |||| | || ||| Sbjct 3530 TTCTTGATTTACCCTATTGGTCAAGGAAGCTTTTCTGATGGTATGCTTTTAGGAATCTCC 3471 Query 166537 GGCACCTTCAACTACATGCTTGTCTTCCAAGCAGAGCACAACATCCTCATGCACCCCTTC 166596 || || ||||||| ||| |||| ||||| ||||||||||||||||| ||||| || ||| Sbjct 3470 GGTACTTTCAACTTTATGATTGTATTCCAGGCAGAGCACAACATCCTTATGCATCCATTC 3411 Query 166597 CATATGCTGGGTGTAG 166612 || ||| | ||||||| Sbjct 3410 CACATGTTAGGTGTAG 3395 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 554338674832000