Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hordeum_20pubiflorum_20[genbank_20GCA_5F000582825.1_202013-08-30] 1,818,420 sequences; 1,425,274,558 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq3662 102 9e-17 seq10215 100 3e-16 seq1746961 95.1 1e-14 seq136955 95.1 1e-14 seq41140 95.1 1e-14 seq770129 93.3 5e-14 seq783984 91.5 2e-13 seq589724 91.5 2e-13 seq766277 87.8 2e-12 seq2750 87.8 2e-12 seq753837 86.0 7e-12 seq1750794 84.2 2e-11 seq1754993 82.4 8e-11 seq132064 82.4 8e-11 seq7454 82.4 8e-11 >seq3662 Length=4340 Score = 102 bits (112), Expect = 9e-17 Identities = 76/88 (86%), Gaps = 2/88 (2%) Strand=Plus/Minus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCT--CGGGAGC 126322 ||||||| ||||||||||||||||||||||||| | ||| |||||| | || || | || Sbjct 1089 AGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCCTCTTACGAGGGC 1030 Query 126323 GTGGGTTCGAACCCCACACCTGACAAAT 126350 ||||||||||||||||| ||||||||| Sbjct 1029 GTGGGTTCGAACCCCACTTCTGACAAAT 1002 >seq10215 Length=4466 Score = 100 bits (110), Expect = 3e-16 Identities = 87/107 (81%), Gaps = 2/107 (2%) Strand=Plus/Plus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCT--CGGGAGC 126322 ||||||| ||||||||||||||||||||||||| | ||| |||||| | || || | || Sbjct 4019 AGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCCTCTTACGAGGGC 4078 Query 126323 GTGGGTTCGAACCCCACACCTGACAAATTATTATTGGAATTTTTGTT 126369 ||| ||| |||||||| ||||||||||||| || | ||||| || Sbjct 4079 GTGTGTTTAAACCCCACTTCTGACAAATTATTTTTTGCCTTTTTCTT 4125 >seq1746961 Length=5021 Score = 95.1 bits (104), Expect = 1e-14 Identities = 78/93 (84%), Gaps = 3/93 (3%) Strand=Plus/Minus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCT--CGGGAGC 126322 ||||||| ||||||||||||||||||||||||| | ||| |||||| | || || | || Sbjct 785 AGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCCTCTTACGAGGGC 726 Query 126323 GTGGGTTCGAACCCCACACCTGACA-AATTATT 126354 |||||||| |||||||| |||||| |||| || Sbjct 725 GTGGGTTCAAACCCCACTTCTGACAGAATTTTT 693 >seq136955 Length=3133 Score = 95.1 bits (104), Expect = 1e-14 Identities = 73/86 (85%), Gaps = 2/86 (2%) Strand=Plus/Minus Query 126264 CAGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCT--CGGGAG 126321 |||||||| ||||||||||||||||||||||||| | ||| |||||| | || || | | Sbjct 540 CAGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCCTCTAACGAGGG 481 Query 126322 CGTGGGTTCGAACCCCACACCTGACA 126347 ||||||||| |||||||| |||||| Sbjct 480 CGTGGGTTCAAACCCCACTTCTGACA 455 >seq41140 Length=3634 Score = 95.1 bits (104), Expect = 1e-14 Identities = 73/86 (85%), Gaps = 2/86 (2%) Strand=Plus/Minus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCT--CGGGAGC 126322 ||||||| ||||||||||||||||||||||||| | ||| |||||| | || || | || Sbjct 605 AGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCCTCTAACGAGGGC 546 Query 126323 GTGGGTTCGAACCCCACACCTGACAA 126348 |||||||| |||||||| ||||||| Sbjct 545 GTGGGTTCAAACCCCACTTCTGACAA 520 >seq770129 Length=6561 Score = 93.3 bits (102), Expect = 5e-14 Identities = 77/92 (84%), Gaps = 3/92 (3%) Strand=Plus/Minus Query 126266 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCT--CGGGAGCG 126323 |||||| ||||||||||||||||||||||||| | ||| |||||| | || || | ||| Sbjct 4007 GTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCCTCTAACGAGGGCG 3948 Query 126324 TGGGTTCGAACCCCACACCTGACA-AATTATT 126354 ||||||| |||||||| |||||| |||| || Sbjct 3947 TGGGTTCAAACCCCACTTCTGACACAATTGTT 3916 >seq783984 Length=2203 Score = 91.5 bits (100), Expect = 2e-13 Identities = 71/84 (85%), Gaps = 2/84 (2%) Strand=Plus/Plus Query 126266 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCT--CGGGAGCG 126323 |||||| ||||||||||||||||||||||||| | ||| |||||| | || || | ||| Sbjct 931 GTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCCTCTTACGAGGGCG 990 Query 126324 TGGGTTCGAACCCCACACCTGACA 126347 ||||||| |||||||| |||||| Sbjct 991 TGGGTTCAAACCCCACTTCTGACA 1014 >seq589724 Length=217 Score = 91.5 bits (100), Expect = 2e-13 Identities = 71/84 (85%), Gaps = 2/84 (2%) Strand=Plus/Minus Query 126266 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCT--CGGGAGCG 126323 |||||| ||||||||||||||||||||||||| | ||| |||||| | || || | ||| Sbjct 217 GTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCCTCTAACGAGGGCG 158 Query 126324 TGGGTTCGAACCCCACACCTGACA 126347 ||||||| |||||||| |||||| Sbjct 157 TGGGTTCAAACCCCACTTCTGACA 134 >seq766277 Length=2591 Score = 87.8 bits (96), Expect = 2e-12 Identities = 63/72 (88%), Gaps = 2/72 (3%) Strand=Plus/Minus Query 126266 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCT--CGGGAGCG 126323 |||||| ||||||||||||||||||||||||||| ||| |||||| | || |||| ||| Sbjct 1338 GTCAGGATGGCCGAGTGGTCTAAGGCGCCAGATTCAAGTTCTGGTCCTCTTGCGGGGGCG 1279 Query 126324 TGGGTTCGAACC 126335 ||||||| |||| Sbjct 1278 TGGGTTCAAACC 1267 >seq2750 Length=18096 Score = 87.8 bits (96), Expect = 2e-12 Identities = 71/85 (84%), Gaps = 2/85 (2%) Strand=Plus/Minus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGT 126324 || ||| |||||||||||||||||||||||||||||| | |||||| || | |||| Sbjct 7631 AGACAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT--CCGAAAGGGCGT 7574 Query 126325 GGGTTCGAACCCCACACCTGACAAA 126349 |||||| ||||||||| ||| |||| Sbjct 7573 GGGTTCAAACCCCACAGCTGTCAAA 7549 >seq753837 Length=9040 Score = 86.0 bits (94), Expect = 7e-12 Identities = 77/95 (81%), Gaps = 4/95 (4%) Strand=Plus/Minus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCT--CGGGAGC 126322 ||||||| ||||||| ||||| ||||||||||| | ||| |||||| | || || | || Sbjct 3618 AGTCAGGATGGCCGACTGGTCCAAGGCGCCAGACTCAAGTTCTGGTCCTCTTACGAGGGC 3559 Query 126323 GTGGGTTCGAACCCCACACCTGACAAATTATTATT 126357 |||||||| |||||||| ||||| ||| ||||| Sbjct 3558 GTGGGTTCAAACCCCACTTCTGAC--ATTTTTATT 3526 >seq1750794 Length=6059 Score = 84.2 bits (92), Expect = 2e-11 Identities = 80/100 (80%), Gaps = 3/100 (3%) Strand=Plus/Plus Query 126268 CAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGTGGG 126327 ||| |||||||||||||||||||||||||||||| | ||||| ||| | ||||||| Sbjct 1625 CAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGG-TCCGAAAAGGGCGTGGG 1683 Query 126328 TTCGAACCCCACACCTGACAAATTATTATTGGAATTTTTG 126367 ||| || |||||| ||| | |||||| || ||| |||| Sbjct 1684 TTCAAATCCCACAGCTGTC--ATTATTTTTAAAATGTTTG 1721 >seq1754993 Length=2612 Score = 82.4 bits (90), Expect = 8e-11 Identities = 71/87 (82%), Gaps = 2/87 (2%) Strand=Plus/Minus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGT 126324 || ||| |||||||||||||||||||||||||||||| | |||||| || | |||| Sbjct 469 AGACAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT--CCGAAAGGGCGT 412 Query 126325 GGGTTCGAACCCCACACCTGACAAATT 126351 |||||| || |||||| ||| || ||| Sbjct 411 GGGTTCAAATCCCACAGCTGTCACATT 385 >seq132064 Length=7652 Score = 82.4 bits (90), Expect = 8e-11 Identities = 71/87 (82%), Gaps = 2/87 (2%) Strand=Plus/Minus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGT 126324 || ||| |||||||||||||||||||||||||||||| | |||||| || | |||| Sbjct 4667 AGACAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT--CCGAAAGGGCGT 4610 Query 126325 GGGTTCGAACCCCACACCTGACAAATT 126351 |||||| || |||||| ||| || ||| Sbjct 4609 GGGTTCAAATCCCACAGCTGTCATATT 4583 >seq7454 Length=4049 Score = 82.4 bits (90), Expect = 8e-11 Identities = 71/87 (82%), Gaps = 2/87 (2%) Strand=Plus/Minus Query 126268 CAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGTGGG 126327 ||| |||||||||||||||||||||||||||||| | |||||| || | ||||||| Sbjct 795 CAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT--CCGAAAGGGCGTGGG 738 Query 126328 TTCGAACCCCACACCTGACAAATTATT 126354 ||| || |||||| ||| || ||| || Sbjct 737 TTCAAATCCCACAGCTGTCATATTTTT 711 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 544203214800800