Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hordeum_20pubiflorum_20[genbank_20GCA_5F000582825.1_202013-08-30] 1,818,420 sequences; 1,425,274,558 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq78186 154 3e-32 seq45121 96.9 7e-15 seq38747 89.7 1e-12 seq37752 89.7 1e-12 seq1754053 87.8 4e-12 seq1748343 87.8 4e-12 seq1747836 87.8 4e-12 seq1745956 87.8 4e-12 seq1744180 87.8 4e-12 seq1532575 87.8 4e-12 seq778062 87.8 4e-12 seq106111 87.8 4e-12 seq85502 87.8 4e-12 seq75040 87.8 4e-12 seq61460 87.8 4e-12 seq39833 87.8 4e-12 seq35596 87.8 4e-12 seq18991 87.8 4e-12 seq3217 87.8 4e-12 seq2673 87.8 4e-12 seq1754277 86.0 1e-11 seq1745067 86.0 1e-11 seq847631 86.0 1e-11 seq65623 86.0 1e-11 seq787375 84.2 4e-11 seq757367 84.2 4e-11 seq151253 84.2 4e-11 seq53405 84.2 4e-11 >seq78186 Length=6745 Score = 154 bits (170), Expect = 3e-32 Identities = 291/428 (68%), Gaps = 0/428 (0%) Strand=Plus/Minus Query 251563 TCGAAGAAATTAGACTTGCCCTCCAGAGAGATTAGCTCCATGAAGTCGAAGGGGTTTGTG 251622 |||||||| || | |||||||| ||| ||||| |||||||| ||||||| ||||| ||| Sbjct 1160 TCGAAGAAGTTGGTCTTGCCCTGCAGCGAGATGAGCTCCATCCAGTCGAACGGGTTGGTG 1101 Query 251623 GCATTGTACTGCTTGGGATGGCCAAGTGCTACGAAGATGCGGTCTGCCACAAACTCCAGA 251682 || |||||| ||||| ||| || || | || | |||||| || || ||||| | Sbjct 1100 GCGTTGTACAGCTTGTTGCAGCCCAGCGCCATGAGCAGGCGGTCGGCGACGAACTCGATG 1041 Query 251683 TACTGTCCCATCAGTTCAGAGTTCATGCCAATCATACGACAAGGAATTGCCTCACAGATG 251742 ||||| | ||| || || ||||||||| | | || || | || || |||| | Sbjct 1040 TACTGGCTCATGAGGTCGCCGTTCATGCCCACGAGCGCGCAGGGGAGCGCGTCGCAGACG 981 Query 251743 AATTCCTTTTCGTTGGCAACTGCCTCCTCCACAATTGCCTTCACCTGTGCCAGAGACAGC 251802 || ||| | ||| || | || |||||| || || | || | | | |||| Sbjct 980 AACTCCCTCTCGATGTCCACGGCCTCCGAGACGATCTCGAAGACGCGGGACTCGTCCAGC 921 Query 251803 TTGTTCTCCAGCTTTGAGTACAGGAGCTCGCCAAACTGTTGGTGCAGACCCTCGTCGCGA 251862 ||| ||| | ||| ||||| | | || | |||||| ||||||||||| Sbjct 920 TTGCCGCGCAGGATGTCGTAGAGGAGGCAGGCGAAGTCGCAGTGCAGGCCCTCGTCGCGG 861 Query 251863 CTGATGAACTCGTTGGACAGACCCAGGCCAGGCATCACCCCACGGTTCCTGAGCCAGAAG 251922 ||||| ||||||||| | ||||| ||||| | || || ||| ||||||||||| Sbjct 860 GAGATGAGCTCGTTGGAGAAGGTGAGGCCCGGCATGAGGCCCCGCTTCTTGAGCCAGAAG 801 Query 251923 ATTGCGCAAAAGGATCCAGAGAACAGCAGACCCTCGACACACACCCATGCAACAAGGCGC 251982 || ||||| ||||| || ||||| | | |||||||| || | | || || | |||| Sbjct 800 ATGGCGCAGAAGGAGCCCGAGAAGAAGATGCCCTCGACGCAGGCGAAGGCGACGATGCGC 741 Query 251983 TCAGCAAA 251990 || || || Sbjct 740 TCGGCGAA 733 >seq45121 Length=4044 Score = 96.9 bits (106), Expect = 7e-15 Identities = 70/81 (86%), Gaps = 0/81 (0%) Strand=Plus/Plus Query 142048 CGCATGTCTCTGTGGCGCAATGGACAGCGCGTTGGACTTCTAATCCAAAGGTTGCGGGTT 142107 |||| ||| |||| ||||| |||| ||||||| ||||||||||||| ||||| ||||||| Sbjct 768 CGCACGTCCCTGTAGCGCAGTGGAAAGCGCGTCGGACTTCTAATCCGAAGGTCGCGGGTT 827 Query 142108 CGACCCCCGCCAGAGACGCCA 142128 ||| ||||||||| || |||| Sbjct 828 CGATCCCCGCCAGGGATGCCA 848 >seq38747 Length=9079 Score = 89.7 bits (98), Expect = 1e-12 Identities = 60/67 (90%), Gaps = 0/67 (0%) Strand=Plus/Minus Query 142502 TAGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGA 142561 ||||||| ||||||||| |||||||||| || ||||||| || |||||||||||||||| Sbjct 1040 TAGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGA 981 Query 142562 GCCCCAC 142568 ||||||| Sbjct 980 GCCCCAC 974 >seq37752 Length=13023 Score = 89.7 bits (98), Expect = 1e-12 Identities = 61/69 (88%), Gaps = 0/69 (0%) Strand=Plus/Minus Query 142499 AGATAGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTT 142558 || ||||||| |||||||||||||||||||| || ||||||| || |||||| |||||| Sbjct 7712 AGGTAGCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCTTGGGTT 7653 Query 142559 CGAGCCCCA 142567 ||||||||| Sbjct 7652 CGAGCCCCA 7644 >seq1754053 Length=2990 Score = 87.8 bits (96), Expect = 4e-12 Identities = 59/66 (89%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| ||||||||| |||||||||| || ||||||| || ||||||||||||||||| Sbjct 2917 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 2976 Query 142563 CCCCAC 142568 |||||| Sbjct 2977 CCCCAC 2982 >seq1748343 Length=4495 Score = 87.8 bits (96), Expect = 4e-12 Identities = 59/66 (89%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| ||||||||| |||||||||| || ||||||| || ||||||||||||||||| Sbjct 4422 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 4481 Query 142563 CCCCAC 142568 |||||| Sbjct 4482 CCCCAC 4487 >seq1747836 Length=9174 Score = 87.8 bits (96), Expect = 4e-12 Identities = 59/66 (89%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| ||||||||| |||||||||| || ||||||| || ||||||||||||||||| Sbjct 2639 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 2698 Query 142563 CCCCAC 142568 |||||| Sbjct 2699 CCCCAC 2704 >seq1745956 Length=2258 Score = 87.8 bits (96), Expect = 4e-12 Identities = 59/66 (89%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| ||||||||| |||||||||| || ||||||| || ||||||||||||||||| Sbjct 1882 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 1941 Query 142563 CCCCAC 142568 |||||| Sbjct 1942 CCCCAC 1947 >seq1744180 Length=20060 Score = 87.8 bits (96), Expect = 4e-12 Identities = 59/66 (89%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| ||||||||| |||||||||| || ||||||| || ||||||||||||||||| Sbjct 859 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 918 Query 142563 CCCCAC 142568 |||||| Sbjct 919 CCCCAC 924 >seq1532575 Length=259 Score = 87.8 bits (96), Expect = 4e-12 Identities = 59/66 (89%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| ||||||||| |||||||||| || ||||||| || ||||||||||||||||| Sbjct 186 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 245 Query 142563 CCCCAC 142568 |||||| Sbjct 246 CCCCAC 251 >seq778062 Length=7598 Score = 87.8 bits (96), Expect = 4e-12 Identities = 59/66 (89%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| ||||||||| |||||||||| || ||||||| || ||||||||||||||||| Sbjct 2527 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 2586 Query 142563 CCCCAC 142568 |||||| Sbjct 2587 CCCCAC 2592 >seq106111 Length=8518 Score = 87.8 bits (96), Expect = 4e-12 Identities = 59/66 (89%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| ||||||||| |||||||||| || ||||||| || ||||||||||||||||| Sbjct 5277 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 5218 Query 142563 CCCCAC 142568 |||||| Sbjct 5217 CCCCAC 5212 >seq85502 Length=2874 Score = 87.8 bits (96), Expect = 4e-12 Identities = 59/66 (89%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| ||||||||| |||||||||| || ||||||| || ||||||||||||||||| Sbjct 189 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 248 Query 142563 CCCCAC 142568 |||||| Sbjct 249 CCCCAC 254 >seq75040 Length=2210 Score = 87.8 bits (96), Expect = 4e-12 Identities = 59/66 (89%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| ||||||||| |||||||||| || ||||||| || ||||||||||||||||| Sbjct 467 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 526 Query 142563 CCCCAC 142568 |||||| Sbjct 527 CCCCAC 532 >seq61460 Length=8007 Score = 87.8 bits (96), Expect = 4e-12 Identities = 59/66 (89%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| ||||||||| |||||||||| || ||||||| || ||||||||||||||||| Sbjct 6168 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 6227 Query 142563 CCCCAC 142568 |||||| Sbjct 6228 CCCCAC 6233 Score = 86.0 bits (94), Expect = 1e-11 Identities = 58/65 (89%), Gaps = 0/65 (0%) Strand=Plus/Plus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 ||||| ||||||||| |||||||||| || ||||||| || |||||||||||||||||| Sbjct 6699 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 6758 Query 142564 CCCAC 142568 ||||| Sbjct 6759 CCCAC 6763 >seq39833 Length=7385 Score = 87.8 bits (96), Expect = 4e-12 Identities = 59/66 (89%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| ||||||||| |||||||||| || ||||||| || ||||||||||||||||| Sbjct 6921 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 6980 Query 142563 CCCCAC 142568 |||||| Sbjct 6981 CCCCAC 6986 >seq35596 Length=13659 Score = 87.8 bits (96), Expect = 4e-12 Identities = 59/66 (89%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| ||||||||| |||||||||| || ||||||| || ||||||||||||||||| Sbjct 12838 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 12897 Query 142563 CCCCAC 142568 |||||| Sbjct 12898 CCCCAC 12903 >seq18991 Length=5530 Score = 87.8 bits (96), Expect = 4e-12 Identities = 59/66 (89%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| ||||||||| |||||||||| || ||||||| || ||||||||||||||||| Sbjct 5415 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 5474 Query 142563 CCCCAC 142568 |||||| Sbjct 5475 CCCCAC 5480 >seq3217 Length=10164 Score = 87.8 bits (96), Expect = 4e-12 Identities = 59/66 (89%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| ||||||||| |||||||||| || ||||||| || ||||||||||||||||| Sbjct 276 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 217 Query 142563 CCCCAC 142568 |||||| Sbjct 216 CCCCAC 211 >seq2673 Length=6802 Score = 87.8 bits (96), Expect = 4e-12 Identities = 59/66 (89%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| ||||||||| |||||||||| || ||||||| || ||||||||||||||||| Sbjct 840 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 781 Query 142563 CCCCAC 142568 |||||| Sbjct 780 CCCCAC 775 >seq1754277 Length=5809 Score = 86.0 bits (94), Expect = 1e-11 Identities = 59/67 (88%), Gaps = 0/67 (0%) Strand=Plus/Plus Query 142501 ATAGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCG 142560 || ||||| |||||||||||||||||||| || ||||||| || |||||| |||||||| Sbjct 4144 ATTGCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCTTGGGTTCG 4203 Query 142561 AGCCCCA 142567 ||||||| Sbjct 4204 AGCCCCA 4210 >seq1745067 Length=4235 Score = 86.0 bits (94), Expect = 1e-11 Identities = 59/67 (88%), Gaps = 0/67 (0%) Strand=Plus/Plus Query 142501 ATAGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCG 142560 || ||||| |||||||||||||||||||| || ||||||| || |||||| |||||||| Sbjct 1807 ATTGCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCTTGGGTTCG 1866 Query 142561 AGCCCCA 142567 ||||||| Sbjct 1867 AGCCCCA 1873 >seq847631 Length=779 Score = 86.0 bits (94), Expect = 1e-11 Identities = 68/82 (83%), Gaps = 0/82 (0%) Strand=Plus/Plus Query 142053 GTCTCTGTGGCGCAATGGACAGCGCGTTGGACTTCTAATCCAAAGGTTGCGGGTTCGACC 142112 ||| |||| ||||| |||| ||||||| ||||||||||||| |||| |||||||||| | Sbjct 192 GTCCCTGTAGCGCAGTGGAAAGCGCGTCGGACTTCTAATCCGAAGGCCGCGGGTTCGATC 251 Query 142113 CCCGCCAGAGACGCCAGGATGT 142134 |||||||| || || | || || Sbjct 252 CCCGCCAGGGATGCGAAGACGT 273 >seq65623 Length=16098 Score = 86.0 bits (94), Expect = 1e-11 Identities = 58/65 (89%), Gaps = 0/65 (0%) Strand=Plus/Minus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 ||||| ||||||||| |||||||||| || ||||||| || |||||||||||||||||| Sbjct 4364 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 4305 Query 142564 CCCAC 142568 ||||| Sbjct 4304 CCCAC 4300 >seq787375 Length=5103 Score = 84.2 bits (92), Expect = 4e-11 Identities = 58/66 (88%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| |||||| || |||||||||| || ||||||| || ||||||||||||||||| Sbjct 1684 AGCCCGTCTAGCTCTGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 1743 Query 142563 CCCCAC 142568 |||||| Sbjct 1744 CCCCAC 1749 >seq757367 Length=9796 Score = 84.2 bits (92), Expect = 4e-11 Identities = 57/64 (89%), Gaps = 0/64 (0%) Strand=Plus/Minus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 ||||| |||||||||||||||||||| || ||||||| || |||||| ||||||||||| Sbjct 2025 GCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCTTGGGTTCGAGC 1966 Query 142564 CCCA 142567 |||| Sbjct 1965 CCCA 1962 >seq151253 Length=317 Score = 84.2 bits (92), Expect = 4e-11 Identities = 64/76 (84%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 ||||||| |||||||||||||||||| ||||||||||| ||||||||||||||| Sbjct 145 AGCCCGGCTAGCTCAGTCGGTAGAGCATGGGACTCTTAATCCCAGGGTCGTGGGTTCGAG 204 Query 142563 CCCCACATCGGGCAGA 142578 |||||| | |||| || Sbjct 205 CCCCACGTTGGGCGGA 220 >seq53405 Length=4928 Score = 84.2 bits (92), Expect = 4e-11 Identities = 74/91 (81%), Gaps = 5/91 (5%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 ||||||| |||||||||||||||||| ||||||||||| ||||||||||||||| Sbjct 1602 AGCCCGGCTAGCTCAGTCGGTAGAGCATGGGACTCTTAATCCCAGGGTCGTGGGTTCGAG 1543 Query 142563 CCCCACATCGGGCAGAAGTCGCCGTCTTTTG 142593 |||||| | |||| |||| | ||||||| Sbjct 1542 CCCCACGTTGGGC----GTCGTC-TCTTTTG 1517 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1003889737891220