Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hordeum_20pubiflorum_20[genbank_20GCA_5F000582825.1_202013-08-30] 1,818,420 sequences; 1,425,274,558 total letters Query= NC_008725.1 Length=111953 Score E Sequences producing significant alignments: (Bits) Value seq1743593 84.2 2e-11 seq752483 82.4 5e-11 >seq1743593 Length=9171 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 ||||| || ||| | || || || || ||||| ||||| ||| |||| |||| | || Sbjct 1542 ATGCAGATCTTTGTCAAGACCTTGACTGGCAAGACCATCACCCTGGAGGTGGAATCTTCA 1483 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAA 21953 || || | | | | | ||| || || || || ||||| | || |||| Sbjct 1482 GACACCATCGACAACGTGAAGGCGAAGATCCAGGACAAGGAGGGCATCCCCCCGGACCAG 1423 Query 21954 CAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAAT 22013 ||||| | |||||||||||||| || || || ||| ||| |||| |||||||| Sbjct 1422 CAGAGGTTGATCTTTGCTGGCAAGCAGCTTGAGGATGGTCGCACTCTGGCGGATTACAAC 1363 Query 22014 ATTCAGAAGGAATCTACTCTTCATATGGT 22042 ||||||||||| |||||||| || |||| Sbjct 1362 ATTCAGAAGGAGTCTACTCTCCACCTGGT 1334 >seq752483 Length=2742 Score = 82.4 bits (90), Expect = 5e-11 Identities = 71/88 (81%), Gaps = 0/88 (0%) Strand=Plus/Plus Query 21949 ACCAACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATT 22008 |||||||||| |||||||||||||| |||||||| |||||| || |||| |||| Sbjct 1099 ACCAACAGAGGCTTATCTTTGCTGGGAAACAACTGGAAGATGGCCGCACCTTGGCTGATT 1158 Query 22009 ACAATATTCAGAAGGAATCTACTCTTCA 22036 |||| ||||||||||| || || || || Sbjct 1159 ACAACATTCAGAAGGAGTCCACCCTCCA 1186 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 350188040420680