Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hordeum_20pubiflorum_20[genbank_20GCA_5F000582825.1_202013-08-30] 1,818,420 sequences; 1,425,274,558 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq78186 401 1e-106 >seq78186 Length=6745 Score = 401 bits (444), Expect = 1e-106 Identities = 604/845 (71%), Gaps = 25/845 (3%) Strand=Plus/Plus Query 42312 TACAAGAAGGCGCAGTTCTCCAACTGGACCGCCGAGGAGATTGACCTGGCCAAGGACACG 42371 |||||||||||| | |||| |||||||||||||||| | ||||| || ||| || Sbjct 352 TACAAGAAGGCGGTGGCCTCCTTCTGGACCGCCGAGGAGGTGGACCTCTCCTCCGACGCG 411 Query 42372 GCCGGCTGGGAGTC-ACTGTCTGAGAACGAAAAGTTT---TTCCTCAAAAACATACTGGC 42427 | |||||| | || ||| ||||| || ||| || || | || || Sbjct 412 CGCCACTGGGACACCACCCTCTCC-AACGACGAGCGCCACTTCATCTCCCACGTGCTCGC 470 Query 42428 CTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGCCACCAGGTTCATGAAAGA 42487 ||||||||||||||| |||||||| || |||||||| ||| ||||||||||| || Sbjct 471 CTTCTTCGCCGCCTCCGACGGCATCGTGCTCGAGAACCTCGCCTCCAGGTTCATGTCCGA 530 Query 42488 GGTGCAGTACTTTGAGGCGCGCTGCTTCTACGGCTTCCAGATAGCCATAGAGAACGTGCA 42547 |||||| | ||||| | |||||||||||||||||| ||||| |||||| | || Sbjct 531 CGTGCAGGTCGCCGAGGCCAGGGCCTTCTACGGCTTCCAGATCGCCATCGAGAACATCCA 590 Query 42548 CTCTGAGGTGTACGCCAAACTGCTCAAC---ACGTACATCCTGGATCCCGTCGAGCGTAA 42604 ||| ||| ||||| || ||||||| | || ||||||| || ||||||| | Sbjct 591 CTCCGAGATGTACTCC---CTGCTCATCGAGACCTACATCCGCGACGACGTCGAGAAGGA 647 Query 42605 CGGGCTGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAAGAAGGCGGACTGGGCGCT 42664 | | || ||| ||||| || || || || | || ||||| ||||||||||| Sbjct 648 CCGCCTCTTCCGCGCCATCGACACCATCCCGGCCGTCCGCCGCAAGGCCGACTGGGCGCT 707 Query 42665 CAACTGGATCGAGAGTCCCGA-CGCAACGTTCGGCGAGAGGCTGGTAGCCTTTACCGCCG 42723 ||||||||| | || ||| |||| |||| | | || ||||| || || Sbjct 708 GCGCTGGATCGACGGCGGGGAGCGC----TTCGCCGAGCGCATCGTCGCCTTCGCCTGCG 763 Query 42724 TCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAAGCAGAAGGTGT 42783 ||||||||||||||||||||||| ||||| | ||||||||||||||||| || || Sbjct 764 TCGAGGGCATCTTCTTCTCGGGCTCCTTCTGCGCCATCTTCTGGCTCAAGAAGCGGGGCC 823 Query 42784 CGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACGAGGGGCTGCATAGGG 42843 ||||| || ||||||||||| ||||| |||||| | | |||||||| ||||| | | Sbjct 824 TCATGCCGGGCCTCACCTTCTCCAACGAGCTCATCTCCCGCGACGAGGGCCTGCACTGCG 883 Query 42844 ACTTTGCCTGCCTCCTGTTCTCGAGCCACCTCAGGCACAAGCCCTCGA--AGGAGCGGGT 42901 |||| ||||||||||| | ||| | ||| | |||| || || || || || Sbjct 884 ACTTCGCCTGCCTCCTCT--ACGA-CATCCTGCGCGGCAAG--CTGGACGAGTCCCGCGT 938 Query 42902 CCGGGCCATCATCACGGAGGCCGTGGAGATCGAGAAGGAGTTCCTCACGCAGTCGCTGCC 42961 | | ||| || ||||||||||||| ||||||| ||||||| || | |||| || Sbjct 939 CTTCGAGATCGTCTCGGAGGCCGTGGACATCGAGAGGGAGTTCGTCTGCGACGCGCTCCC 998 Query 42962 CGTGTCCCTGGTCGGCATGAACCACGACCTCATGTGCAAGTACATCCAGTACGTCGCCGA 43021 | | || || ||||||||| |||||||||| || |||||||| ||| ||||||||| Sbjct 999 CTGCGCGCTCGTGGGCATGAACGGCGACCTCATGAGCCAGTACATCGAGTTCGTCGCCGA 1058 Query 43022 CCATCTCCT-GTGCCAGATGGGTCTCAGCCGCCTCTACAACACGCCGTGCCCCTTCGACT 43080 || || || || | | |||| || | || |||||| | | ||| ||||||| Sbjct 1059 CCGCCTGCTCATGGC-GCTGGGCTGCAACAAGCTGTACAACGCCACCAACCCGTTCGACT 1117 Query 43081 TTATGGAGAACATCTCGTTGGAGGGCAAGACCAACTTTTTCGAGAAGCGCGTCGCCGACT 43140 |||||| ||||||| || |||||||||||||||| |||||||||||||||| ||| | Sbjct 1118 GGATGGAGCTCATCTCGCTGCAGGGCAAGACCAACTTCTTCGAGAAGCGCGTCGGCGAGT 1177 Query 43141 ACCAG 43145 ||||| Sbjct 1178 ACCAG 1182 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 922874133899200