Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hordeum_20pubiflorum_20[genbank_20GCA_5F000582825.1_202013-08-30] 1,818,420 sequences; 1,425,274,558 total letters Query= NC_009503.1 Length=124121 Score E Sequences producing significant alignments: (Bits) Value seq756917 98.7 8e-16 seq8128 98.7 8e-16 seq774391 96.9 3e-15 seq759537 96.9 3e-15 seq5142 95.1 9e-15 seq5304 91.5 1e-13 seq763663 87.8 1e-12 seq760657 86.0 5e-12 seq752332 86.0 5e-12 seq164858 86.0 5e-12 seq1748397 84.2 2e-11 seq765366 84.2 2e-11 seq750503 84.2 2e-11 seq184930 84.2 2e-11 seq116425 84.2 2e-11 seq36911 84.2 2e-11 seq7669 84.2 2e-11 >seq756917 Length=3581 Score = 98.7 bits (108), Expect = 8e-16 Identities = 105/136 (77%), Gaps = 2/136 (1%) Strand=Plus/Minus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 || || | ||| || |||||||||||||| || ||||||||| |||||||| |||||| Sbjct 320 CCACCACGCAGGCGGAGCACCAGATGAAGGGTAGACTCCTTCTGGATGTTGTAGTCTGCC 261 Query 33961 A-ATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGG 34019 | | || || | || || | |||||||||||||| || ||||||||||| ||| || Sbjct 260 AGAGTGCGGC-CATCCTCAAGCTGCTTGCCGGCAAAGATGAGGCGCTGCTGGTCCGGGGG 202 Query 34020 CACGCTCTCTTTGTCC 34035 | || ||| |||||| Sbjct 201 GATGCCCTCCTTGTCC 186 >seq8128 Length=3827 Score = 98.7 bits (108), Expect = 8e-16 Identities = 105/136 (77%), Gaps = 2/136 (1%) Strand=Plus/Minus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 || || || |||| |||||||||||||| ||| ||||||||| || |||||||| || Sbjct 3290 CCACCCCTGAGCCTGAGCACCAGATGAAGGGTGGACTCCTTCTGGATATTGTAATCGGC- 3232 Query 33961 AATTGTC-GCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGG 34019 || |||| | | || || | |||||||| ||||| || ||||||||||| ||| ||| Sbjct 3231 AAGTGTCCGGCCATCCTCGAGCTGCTTGCCCGCAAAGATGAGGCGCTGCTGGTCCGGCGG 3172 Query 34020 CACGCTCTCTTTGTCC 34035 | || ||| |||||| Sbjct 3171 GATGCCCTCCTTGTCC 3156 Score = 95.1 bits (104), Expect = 9e-15 Identities = 162/231 (70%), Gaps = 8/231 (3%) Strand=Plus/Minus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 || || | ||| || ||||||||||| || || ||||||||||||||||||||| ||| Sbjct 3518 CCACCACGCAGGCGGAGCACCAGATGGAGAGTAGACTCCTTCTGAATGTTGTAATCCGCC 3459 Query 33961 A-ATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGG 34019 | | || || |||| || | |||||||| ||||| |||| | |||||| ||| || Sbjct 3458 AGAGTG-CGACCGTCCTCAAGCTGCTTGCCCGCAAAGATCAACCTCTGCTGGTCCGGAGG 3400 Query 34020 CACGCTCTCTTTGTCCATAATTTTTTGCTT---AATGGAACTCACACTATCAGTAGATTC 34076 | || ||| |||||| || || ||| | || | | |||| | ||| || Sbjct 3399 GATGCCCTCCTTGTCCTGGATCTTCGCCTTCACATTGTCA---ATGGTATCCGAAGACTC 3343 Query 34077 GCATTCGACCGTTATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCAT 34127 | || | || || || || ||||| || |||||||| ||||| ||||| Sbjct 3342 GACCTCCAGAGTAATGGTCTTGCCGGTGAGGGTTTTCACGAAGATCTGCAT 3292 >seq774391 Length=5162 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/225 (70%), Gaps = 2/225 (1%) Strand=Plus/Minus Query 33910 AGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCCAATTGTCGC 33969 |||| |||||||| || || ||| ||||||||| |||||||| || ||||| || Sbjct 5031 AGCCTGAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGCCAAGGTGCGG 4972 Query 33970 TCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGCACGCTCTCT 34029 | || |||| ||||||||| ||||| || || |||||||| ||| || | || ||| Sbjct 4971 CCATCCTCCAGTTGCTTGCCAGCAAAGATGAGACGCTGCTGGTCCGGAGGGATGCCCTCC 4912 Query 34030 TTGTCCATAATTTTTTGCTTAATGGAACTCACAC-TATCAGTAGATTCGCATTCGACCGT 34088 || ||| || || ||| | | ||| | | |||| ||| || |||| || Sbjct 4911 TTATCCTGGATCTTGGCCTTCACGTTG-TCAATCGTGTCAGAAGACTCAACCTCGAGGGT 4853 Query 34089 TATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCATTTTTAA 34133 || || || ||||| || || ||||||||||| ||||| | ||| Sbjct 4852 GATGGTCTTGCCGGTGAGAGTCTTCACAAAGATCTGCATCTGTAA 4808 >seq759537 Length=12225 Score = 96.9 bits (106), Expect = 3e-15 Identities = 104/135 (77%), Gaps = 2/135 (1%) Strand=Plus/Plus Query 33910 AGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCCA-ATTGTCG 33968 || || |||||||| || || ||| |||||||||||| |||||||| || | | || || Sbjct 2638 AGGCGGAGCACCAGGTGTAGGGTGGACTCCTTCTGAATATTGTAATCCGCGAGAGTG-CG 2696 Query 33969 CTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGCACGCTCTC 34028 |||| || | ||||||||||| || |||||||||||||| ||| ||| | || ||| Sbjct 2697 GCCGTCCTCGAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCCGGCGGGATGCCCTC 2756 Query 34029 TTTGTCCATAATTTT 34043 |||||| | || || Sbjct 2757 CTTGTCCTTGATCTT 2771 >seq5142 Length=9133 Score = 95.1 bits (104), Expect = 9e-15 Identities = 102/135 (76%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 || || || |||| ||| |||| ||| ||||| ||||||||||||||||||||| || Sbjct 2087 CCACCCCTGAGCCTCAGGACCAAATGGAGCGTCGACTCCTTCTGAATGTTGTAATCAGCT 2028 Query 33961 AATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGC 34020 ||| |||| | || ||||| ||||| || ||||| || || | |||||||| || Sbjct 2027 AATGTTCGCCCATCTTCCAACTGCTTTCCAGCAAAAATTAGCCTTTGCTGATCTGGGGGA 1968 Query 34021 ACGCTCTCTTTGTCC 34035 | || ||| |||||| Sbjct 1967 ATGCCCTCCTTGTCC 1953 >seq5304 Length=2956 Score = 91.5 bits (100), Expect = 1e-13 Identities = 98/127 (77%), Gaps = 2/127 (2%) Strand=Plus/Plus Query 33910 AGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCCA-ATTGTCG 33968 || || |||||||| || || ||| |||||||||||||||||||||||| | | || || Sbjct 684 AGGCGGAGCACCAGGTGCAGGGTGGACTCCTTCTGAATGTTGTAATCTGCAAGAGTG-CG 742 Query 33969 CTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGCACGCTCTC 34028 | || || | |||||||||||||| |||| ||||||||| ||| | | || ||| Sbjct 743 GCCATCCTCGAGCTGCTTGCCGGCAAAGATCAAGCGCTGCTGGTCCGGAAGGATGCCCTC 802 Query 34029 TTTGTCC 34035 |||||| Sbjct 803 CTTGTCC 809 >seq763663 Length=3499 Score = 87.8 bits (96), Expect = 1e-12 Identities = 103/137 (75%), Gaps = 2/137 (1%) Strand=Plus/Plus Query 33900 ACCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGC 33959 |||||| | || ||||| || || ||||| ||| ||||||||| |||||||| || || Sbjct 3156 ACCTCCACGGAGACGCAGGACAAGGTGAAGAGTGGACTCCTTCTGGATGTTGTAGTCAGC 3215 Query 33960 CA-ATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCG 34018 | | || || |||| |||| ||||| || ||||| || ||||||||||| ||| | Sbjct 3216 AAGAGTGCGGC-CGTCCTCCAGCTGCTTTCCTGCAAAGATGAGGCGCTGCTGGTCCGGGG 3274 Query 34019 GCACGCTCTCTTTGTCC 34035 | | || ||| |||||| Sbjct 3275 GGATGCCCTCCTTGTCC 3291 Score = 86.0 bits (94), Expect = 5e-12 Identities = 84/106 (79%), Gaps = 2/106 (2%) Strand=Plus/Plus Query 33910 AGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCCAATTGT-CG 33968 || ||||| || |||||||| ||| ||||||||| ||||||||||| | ||| || || Sbjct 3394 AGACGCAGGACAAGATGAAGGGTGGACTCCTTCTGGATGTTGTAATCAG-CAAGGGTACG 3452 Query 33969 CTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCC 34014 | || |||| |||||||| ||||| || ||||||||||| ||| Sbjct 3453 GCCATCCTCCAGCTGCTTGCCAGCAAAGATGAGGCGCTGCTGGTCC 3498 >seq760657 Length=5773 Score = 86.0 bits (94), Expect = 5e-12 Identities = 89/114 (78%), Gaps = 2/114 (2%) Strand=Plus/Minus Query 33910 AGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCCAAT-TGTCG 33968 || || ||||| || ||||||||| ||||||||| |||||||| || |||| ||| | Sbjct 3800 AGGCGGAGCACGAGGTGAAGCGTGGACTCCTTCTGGATGTTGTAGTCCGCCAGCGTGTGG 3741 Query 33969 CTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGCAC 34022 | | || |||| ||||| || || || || ||||||||||||||| |||||| Sbjct 3740 C-CTTCTTCCAGCTGCTTCCCTGCGAAGATGAGGCGCTGCTGATCCGGCGGCAC 3688 >seq752332 Length=10290 Score = 86.0 bits (94), Expect = 5e-12 Identities = 102/136 (75%), Gaps = 2/136 (1%) Strand=Plus/Plus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 || || | ||| || || || || || || ||| ||||||||| |||||||| || || Sbjct 4603 CCACCACGCAGACGGAGGACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGC- 4661 Query 33961 AATTGT-CGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGG 34019 || || || | || |||| |||||||||||||| |||||||||||||| ||| || Sbjct 4662 AAGGGTGCGGCCATCCTCCAGCTGCTTGCCGGCAAAGATCAGGCGCTGCTGGTCCGGGGG 4721 Query 34020 CACGCTCTCTTTGTCC 34035 | || ||| |||||| Sbjct 4722 GATGCCCTCCTTGTCC 4737 Score = 84.2 bits (92), Expect = 2e-11 Identities = 94/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 33910 AGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCCAATTGTCGC 33969 || ||||| || || ||||| || ||||||||| |||||||| || || | || Sbjct 4840 AGACGCAGGACAAGGTGAAGGGTAGACTCCTTCTGGATGTTGTAGTCAGCGAGGGTACGG 4899 Query 33970 TCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGCACGCTCTCT 34029 | || |||| |||||||||||||| |||||||||||||| ||| || | || ||| Sbjct 4900 CCATCCTCCAGCTGCTTGCCGGCAAAGATCAGGCGCTGCTGGTCCGGTGGGATGCCCTCC 4959 Query 34030 TTGTCC 34035 |||||| Sbjct 4960 TTGTCC 4965 >seq164858 Length=2471 Score = 86.0 bits (94), Expect = 5e-12 Identities = 100/135 (74%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 ||||| | ||||| |||||||| || || ||| ||||||||| |||||||| || ||| Sbjct 2129 CCTCCACGCAGCCTGAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGCC 2188 Query 33961 AATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGC 34020 | || | || || | |||||||||||||| || ||||||||||| ||| || Sbjct 2189 AGGGTGCGGCCATCCTCGAGCTGCTTGCCGGCAAAGATGAGGCGCTGCTGGTCCGGAGGG 2248 Query 34021 ACGCTCTCTTTGTCC 34035 | | ||| |||||| Sbjct 2249 ATTCCCTCCTTGTCC 2263 Score = 82.4 bits (90), Expect = 6e-11 Identities = 99/135 (73%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 || || | ||| || |||||||| ||||| || ||||||||| |||||||| |||||| Sbjct 1901 CCACCACGCAGGCGGAGCACCAGGTGAAGGGTAGACTCCTTCTGGATGTTGTAGTCTGCC 1960 Query 33961 AATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGC 34020 | || | || || | ||||||||||| || || || |||||||| ||| || Sbjct 1961 AGGGTGCGGCCATCCTCAAGCTGCTTGCCGGCGAAGATAAGTCGCTGCTGGTCCGGGGGG 2020 Query 34021 ACGCTCTCTTTGTCC 34035 | || ||| |||||| Sbjct 2021 ATGCCCTCCTTGTCC 2035 >seq1748397 Length=13441 Score = 84.2 bits (92), Expect = 2e-11 Identities = 94/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 33910 AGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCCAATTGTCGC 33969 || || |||||||| || ||||| ||||||||| |||||||| || || | || Sbjct 9743 AGGCGGAGCACCAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCAGCGAGGGTGCGG 9802 Query 33970 TCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGCACGCTCTCT 34029 |||| || | ||||||||||| || || ||||||||||| ||| ||| | || ||| Sbjct 9803 CCGTCCTCGAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCCGGCGGGATGCCCTCC 9862 Query 34030 TTGTCC 34035 |||||| Sbjct 9863 TTGTCC 9868 >seq765366 Length=14197 Score = 84.2 bits (92), Expect = 2e-11 Identities = 94/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 33910 AGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCCAATTGTCGC 33969 || || |||||||| || || ||| ||||||||| ||||||||||| |||| ||| Sbjct 555 AGGCGGAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAATCGGCCAGGGTGCGC 614 Query 33970 TCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGCACGCTCTCT 34029 | || || | |||||||| ||||| |||| |||||||| ||| || | || ||| Sbjct 615 CCATCCTCGAGCTGCTTGCCCGCAAAGATCAACCGCTGCTGGTCCGGGGGGATGCCCTCC 674 Query 34030 TTGTCC 34035 |||||| Sbjct 675 TTGTCC 680 >seq750503 Length=22229 Score = 84.2 bits (92), Expect = 2e-11 Identities = 89/115 (77%), Gaps = 2/115 (2%) Strand=Plus/Minus Query 33900 ACCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGC 33959 ||| || || |||| || |||| ||||| || |||||||||||||||||| || | Sbjct 12039 ACCGCCCCTGAGCCTGAGGACCAAGTGAAGAGTCGACTCCTTCTGAATGTTGTAGTCAG- 11981 Query 33960 CAATTGT-CGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATC 34013 ||| ||| ||| | || ||||| |||||||| |||||||||| ||||| || || Sbjct 11980 CAAGTGTGCGCCCATCCTCCAACTGCTTGCCAGCAAATATCAAACGCTGTTGGTC 11926 >seq184930 Length=1266 Score = 84.2 bits (92), Expect = 2e-11 Identities = 94/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 33910 AGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCCAATTGTCGC 33969 ||||| ||||||| ||||||||| ||||||||| |||||||| || |||| || Sbjct 539 AGCCGGAGCACCAAGTGAAGCGTGGACTCCTTCTGGATGTTGTAGTCCGCCAGGGTGCGG 480 Query 33970 TCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGCACGCTCTCT 34029 | || || | ||||| || || || |||||||||||||| ||| || | || ||| Sbjct 479 CCATCCTCAAGCTGCTTACCAGCGAAGATCAGGCGCTGCTGGTCCGGGGGGATGCCCTCC 420 Query 34030 TTGTCC 34035 |||||| Sbjct 419 TTGTCC 414 >seq116425 Length=987 Score = 84.2 bits (92), Expect = 2e-11 Identities = 94/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 33910 AGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCCAATTGTCGC 33969 || || |||||||| ||||| ||| ||||||||| |||||||| || || | || Sbjct 184 AGGCGGAGCACCAGGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCCGCGAGGGTGCGA 125 Query 33970 TCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGCACGCTCTCT 34029 | || |||| ||||||||||| || || ||||||||||| ||| || | || ||| Sbjct 124 CCATCCTCCAGCTGCTTGCCGGCGAAGATAAGGCGCTGCTGGTCCGGGGGGATGCCCTCC 65 Query 34030 TTGTCC 34035 |||||| Sbjct 64 TTGTCC 59 >seq36911 Length=12065 Score = 84.2 bits (92), Expect = 2e-11 Identities = 81/104 (78%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 33910 AGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCCAATTGTCGC 33969 || || |||||||| || || ||| ||||||||| |||||||| || |||| || Sbjct 7537 AGGCGGAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCCAGGGTGCGG 7596 Query 33970 TCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATC 34013 | || ||||| |||||||| ||||| |||||||||||||| || Sbjct 7597 CCATCCTCCAACTGCTTGCCAGCAAAGATCAGGCGCTGCTGGTC 7640 >seq7669 Length=6130 Score = 84.2 bits (92), Expect = 2e-11 Identities = 94/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 33910 AGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCCAATTGTCGC 33969 || || ||||||||||| || ||| ||||||||| |||||||| || |||| || Sbjct 6005 AGGCGGAGCACCAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGCCAGGGTGCGG 5946 Query 33970 TCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGCACGCTCTCT 34029 | || || | |||||||| ||||| || ||||||||||| ||| || | || ||| Sbjct 5945 CCATCCTCAAGCTGCTTGCCAGCAAAGATGAGGCGCTGCTGGTCCGGAGGGATGCCCTCC 5886 Query 34030 TTGTCC 34035 |||||| Sbjct 5885 TTGTCC 5880 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 388262705572840