Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hordeum_20pubiflorum_20[genbank_20GCA_5F000582825.1_202013-08-30] 1,818,420 sequences; 1,425,274,558 total letters Query= NC_009899.1 Length=344691 Score E Sequences producing significant alignments: (Bits) Value seq78186 168 1e-36 >seq78186 Length=6745 Score = 168 bits (186), Expect = 1e-36 Identities = 359/533 (67%), Gaps = 6/533 (1%) Strand=Plus/Plus Query 243208 CTTTTCGACGCCATCGAAAACATTCCGGCGGTTCATAACAAGGCAAAATGGGCTCAGAAG 243267 || ||| ||||||||| | ||| ||||| || | |||||| | ||||| | | Sbjct 652 CTCTTCCGCGCCATCGACACCATCCCGGCCGTCCGCCGCAAGGCCGACTGGGCGCTGCGC 711 Query 243268 TGGCTAGAACCCGGTAAATCATTTGCTGAGCGTCTCGTCGCCTGGGTGTGCGTTGAAGGT 243327 ||| | || ||| | || || ||||| ||||||||| | ||||| || || Sbjct 712 TGGATCGACGGCGGGGAGCGCTTCGCCGAGCGCATCGTCGCCTTCGCCTGCGTCGAGGGC 771 Query 243328 ATTCTGTTTTCCGGGAGTTTCTGCGCCATCTTTTGGCTGCGGAACAAAGGTGTGATGCCT 243387 || | || || || |||||||||||||| ||||| ||| || | ||||| Sbjct 772 ATCTTCTTCTCGGGCTCCTTCTGCGCCATCTTCTGGCTCAAGAAGCGGGGCCTCATGCCG 831 Query 243388 GGCCTCGGTCTGTCTAACGAGTTCATCAGTCGCGACGAGGGCCTTCACCAACAGTTCGGT 243447 |||||| | || |||||| ||||| |||||||||||||| ||| | |||| Sbjct 832 GGCCTCACCTTCTCCAACGAGCTCATCTCCCGCGACGAGGGCCTGCACTGCGACTTCGCC 891 Query 243448 GAGCTTATGTATTCAAAGCTCCAGAACAAGCT--ACCATTCGAAACG-GTCAAACAAATC 243504 || | || | || | |||||| || | || || ||| | ||| Sbjct 892 TGCCTCCTCTACGACATCCTGCGCGGCAAGCTGGACGAGTCC---CGCGTCTTCGAGATC 948 Query 243505 ATCACAGAAGCAGTTGAAAACGAAAAGGAATTCATTTGCGACGCTATTCCATGCCGGCTT 243564 || | || || || || | ||| | ||| ||| | |||||||| | || ||| ||| Sbjct 949 GTCTCGGAGGCCGTGGACATCGAGAGGGAGTTCGTCTGCGACGCGCTCCCCTGCGCGCTC 1008 Query 243565 ATTGGCATGAACTCTGAACTCATGGGACAGTACATCGAATTCGTAGCCGACCGCATTTTC 243624 | ||||||||| || |||||| | ||||||||||| ||||| ||||||||| | || Sbjct 1009 GTGGGCATGAACGGCGACCTCATGAGCCAGTACATCGAGTTCGTCGCCGACCGCCTGCTC 1068 Query 243625 ATCGCGCTTGGTTATGAGAAAGTGTACAACTCCAAGAACCCCTTTGCCTTTATGGAGCTC 243684 || ||||| || | | || |||||||| ||| ||||| || | || ||||||||| Sbjct 1069 ATGGCGCTGGGCTGCAACAAGCTGTACAACGCCACCAACCCGTTCGACTGGATGGAGCTC 1128 Query 243685 ATTTCGCTTCAAGGGAAAACTAACTTCTTCGAAAAGCGTGTCAGTGATTATCA 243737 || ||||| || || || || ||||||||||| ||||| ||| | || || || Sbjct 1129 ATCTCGCTGCAGGGCAAGACCAACTTCTTCGAGAAGCGCGTCGGCGAGTACCA 1181 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1077184543427000