Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hordeum_20pubiflorum_20[genbank_20GCA_5F000582825.1_202013-08-30] 1,818,420 sequences; 1,425,274,558 total letters Query= NC_010191.2 Length=186713 Score E Sequences producing significant alignments: (Bits) Value seq78186 167 3e-36 seq763138 113 5e-20 seq49623 98.7 1e-15 >seq78186 Length=6745 Score = 167 bits (184), Expect = 3e-36 Identities = 316/454 (70%), Gaps = 12/454 (3%) Strand=Plus/Minus Query 125758 GTAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGATATTCTCCAT 125817 ||| || || || ||||||||||||||||| ||||| || | || ||| |||||| Sbjct 1179 GTACTCGCCGACGCGCTTCTCGAAGAAGTTGGTCTTGCCCTGCAGCGAGATGAGCTCCAT 1120 Query 125818 AAAATCAAATGGGTTCTTTGAGTTCCAAA--TTGTTGGCACCCCAATCTGTTTGAGGAGA 125875 | || || ||||| | | ||| | | |||||| || |||| | |||| || Sbjct 1119 CCAGTCGAACGGGTTGGTGGCGTTGTACAGCTTGTTG-CAGCCCAG-CGCCATGAGCAGG 1062 Query 125876 CGATCCGAGACGTACTCAATGTACTCAGACATCTTCTCAGAGTTCATACCGATGAGGTTA 125935 || || | |||| |||| ||||||| ||| || |||||| || | ||| Sbjct 1061 CGGTCGGCGACGAACTCGATGTACTGGCTCATGAGGTCGCCGTTCATGCCCACGAGCGCG 1002 Query 125936 CATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATTTCCACGGCTTCCCGCACGATGGCG 125995 || ||||||||||| ||| |||| || |||| || |||||||| ||| ||||| || Sbjct 1001 CAGGGGAGCGCGTCGCAGACGAACTCCCTCTCGATGTCCACGGCCTCCGAGACGATCTCG 942 Query 125996 TGAATGGTGTCCACC-CCAGGTCTATTGCGCA--AAGTCTT-GAAGAGTTCCACGGCAAA 126051 | | | | | |||| | | ||||| | ||| | || ||| || ||| || Sbjct 941 AAGACGCGGGACTCGTCCAGCT-TGCCGCGCAGGATGTCGTAGAGGAGG--CA-GGCGAA 886 Query 126052 CTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCCTGGCAT 126111 || ||| || |||||||| ||||||||||| || || |||||| || || ||||| Sbjct 885 GTCGCAGTGCAGGCCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAGGTGAGGCCCGGCAT 826 Query 126112 GAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGATTCCCTC 126171 ||| ||||||||||| | |||||| || || || || || |||||||||||||| ||||| Sbjct 825 GAGGCCCCGCTTCTTGAGCCAGAAGATGGCGCAGAAGGAGCCCGAGAAGAAGATGCCCTC 766 Query 126172 CACACACGCGAACGCAAAGAGACGCTCAGCAAAG 126205 || || ||||| || | || ||||| || ||| Sbjct 765 GACGCAGGCGAAGGCGACGATGCGCTCGGCGAAG 732 >seq763138 Length=14332 Score = 113 bits (124), Expect = 5e-20 Identities = 298/447 (67%), Gaps = 10/447 (2%) Strand=Plus/Minus Query 10710 CCAACTTCTTGTCTCTGGCG-TGGACACCCAAA--ATCTTCTCGCGACCGCGCACACTGG 10766 ||| |||||||| ||||| || ||||| | |||| |||||| |||||||| || Sbjct 4800 CCAGCTTCTTGT---TGGCGCTGTGCACCCTGAGGATCTCCTCGCGGCCGCGCACGTCGG 4744 Query 10767 GTAGGGACACGGTGATCTTACGATCAAAGCGACCTGGGCGGAGGAGGGCGTCGTCAAGGA 10826 | || ||||| | || || || ||||| || |||||||| || ||| |||| |||| Sbjct 4743 GAAGCCCCACGGACACCTGCCGGTCGAAGCGGCCGGGGCGGAGCAGCGCGGCGTCGAGGA 4684 Query 10827 TATCAATGCGGTTCGTCGCCGCGATGACAACGATGCCCGTCTCGTTATCAAAGCCATCCA 10886 | || |||||||| || ||||| || | || ||| | ||| ||||| |||| Sbjct 4683 TTTCCGGCCGGTTCGTGGCGGCGATCACGATGACGCCGCTGTCGCCGCGGAAGCCGTCCA 4624 Query 10887 TCTCAGTCAAGAGTTGATTGATGGTTTGTTCGCGTTCATCATT-CGCGGGCATACCACCC 10945 |||| || | || || || | || || || || || || || | | || | ||| Sbjct 4623 TCTCGGTGAGCAGCTGGTTCAGAGTCTGCTCACGCTCGTCGTTGCCCCCGCCGATG-CCC 4565 Query 10946 GCACTGCGTTGCTTACCGACGGCGTCAATTTCATCGATGAAAACGATACACGGTTGATTT 11005 | | ||| ||| ||||||||||| || || |||||||| || | ||||| || Sbjct 4564 GTGCCGCGCTGCCGGCCGACGGCGTCGATCTCGTCGATGAACACCAGGCACGGCGCGTTG 4505 Query 11006 TCACGGGCAACTTCAAAGATATCTCGGACTCTCTTGGCACCGACACCCACAAACATTTCC 11065 || ||| | || | || || || | | || || || ||||| ||||| || Sbjct 4504 TCCTTGGCCTTGTTGAACAGGTCCCGCACCCGCGACGCGCCCACGCCCACGAACATCTCG 4445 Query 11066 ACAAAATTGGCGGCGGAACATTG-GATGAAGGGGACGTTGGATTCACCCGCGATGGCTCG 11124 | || | | ||| ||| | || |||||| ||| || || |||||||| || Sbjct 4444 ATGAACTCCGACCCGG-ACAGCGAGAAGAAGGGCACGCCGGCCTCGCCCGCGATCGCCTT 4386 Query 11125 GGCGAGGAGGGTCTTCCCCGTCCCAGG 11151 ||| || || |||||||||||||| || Sbjct 4385 GGCCAGCAGCGTCTTCCCCGTCCCCGG 4359 >seq49623 Length=10526 Score = 98.7 bits (108), Expect = 1e-15 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 115175 TGTGGCCTTGGTGTACCAGCGTTGAAGAGGGTTGGTGTCGCGTGGATGAACATACCTTGG 115234 || |||||||| || ||||||||||| |||||||||| || || | ||| | ||| Sbjct 3730 TGAGGCCTTGGGGTGCCAGCGTTGAAAAGGGTTGGTGAAGCATGAGTAAACCAGCGCTGG 3671 Query 115235 GACATCTTATCGTAGGTCTCCAAGACGGCGGGAATGTCTTCCCCGTGAATACCGATCGAG 115294 ||||| || |||||| | | | | | ||||| ||| ||| || || | || Sbjct 3670 GACATGAGATGGTAGGTTCTGATGGCAGAGTCGATGTCATCCTTGTGTATCCCTACTGAA 3611 Query 115295 ACCCGCATAAACATGTATTGGGGTGTTTCCATCAGGATACCATCGAGCCTCTGGAGGTAA 115354 |||| ||| ||||||| || || |||||| | | ||| | ||| || |||||||| Sbjct 3610 ACCCTCATTAACATGTGCTGCGGCCTTTCCACGACAACCCCACCAAGCTTCAGGAGGTAA 3551 Query 115355 CTCTTCTCCAAGGTCTTGAGACCAAAATAACCAAAGTCATAGTCCCT 115401 | |||||| ||||||| ||||| || || | ||| ||||||| Sbjct 3550 GACCTCTCCAGAGTCTTGAAGCCAAAGTAGTCATAATCAAAGTCCCT 3504 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583775603333600