Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hordeum_20pubiflorum_20[genbank_20GCA_5F000582825.1_202013-08-30] 1,818,420 sequences; 1,425,274,558 total letters Query= NC_011423.1 Length=111724 Score E Sequences producing significant alignments: (Bits) Value seq752483 87.8 1e-12 >seq752483 Length=2742 Score = 87.8 bits (96), Expect = 1e-12 Identities = 158/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 ||||||| || | | ||| | || |||||||| || ||||| |||||||||||| | Sbjct 982 CCACCTCTCAGGCGGAGAACAAGGTGGAGGGTAGACTCCTTTTGGATGTTGTAATCG--G 925 Query 15010 AGAATTCTCG--CGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTG 15067 ||| || | || |||| || |||||||| |||| | | ||||||||| | Sbjct 924 CCAATGTCCGGCCATCCTCTAGCTGCTTGCCAGCAAATATGAGCCTCTGTTGGTCCGGAG 865 Query 15068 GAATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTA 15127 | || || |||||||| ||| ||| ||| ||| | || || ||||| | || | Sbjct 864 GGATGCCCTCCTTGTCCTGAATCTTGGCTTTAACATTGTCAATGGTATCCGAACCCTCAA 805 Query 15128 CGTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 | || | ||| || || || || || || || |||||||| || ||||| Sbjct 804 CCTCGAGGGTGATAGTCTTGCCGGTGAGGGTCTTTACAAAGATCTGCAT 756 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 349471480729700