Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hordeum_20pubiflorum_20[genbank_20GCA_5F000582825.1_202013-08-30] 1,818,420 sequences; 1,425,274,558 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq765366 102 7e-17 seq774391 100 3e-16 seq8128 96.9 3e-15 seq750497 95.1 1e-14 seq4499 86.0 6e-12 seq763663 84.2 2e-11 seq22228 82.4 7e-11 >seq765366 Length=14197 Score = 102 bits (112), Expect = 7e-17 Identities = 161/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || || || | |||||| | ||| || || || ||||| ||||| |||||||| ||||| Sbjct 771 ATACCACCCCTGAGCCTGAGCACCAGGTGAAGGGTTGACTCCTTCTGGATATTGTAATCA 830 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | ||| ||| || | ||| || || || | || | ||| |||||||||||| Sbjct 831 GCAAGGGTCCGTCCATCCTCAAGTTGCTTGCCAGCAAAGATGAGTCGCTGCTGGTCCGGC 890 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290 || ||||| || ||||| || || ||| |||| || | ||||| || |||||| Sbjct 891 GGGATGCCCTCCTTATCCTGGATCTTTGCCTTGACATTGTCGATCGTGTCAGAGGACTCG 950 Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCATC 45341 || || || || | || ||||| || || || || || || || |||||| Sbjct 951 ACCTCAAGTGTGATGGTCTTGCCAGTGAGTGTCTTCACGAAGATCTGCATC 1001 Score = 86.0 bits (94), Expect = 6e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 45131 CACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTC 45190 ||| || || || || || ||||| ||||| || |||||| | ||| ||| || Sbjct 563 CACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAATCGGCCAGGGTGCGCCCATCCTC 622 Query 45191 CAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTG 45250 | || || || || | ||||| || ||||||||||| || ||||| || || || || Sbjct 623 GAGCTGCTTGCCCGCAAAGATCAACCGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTG 682 Query 45251 AATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTT 45310 || || |||| || | |||||||||||||| || || ||||| | || || Sbjct 683 GATCTTCGCCTTGACATTGTCAATCGTGTCGGAAGACTCCACCTCAAGAGTGATGGTCTT 742 Query 45311 GCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 |||||| || || || || || || ||||| Sbjct 743 GCCGGTGAGGGTCTTCACGAAGATCTGCAT 772 >seq774391 Length=5162 Score = 100 bits (110), Expect = 3e-16 Identities = 163/232 (70%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || || || |||||||| | ||| || || || || || ||||| ||||| || || || Sbjct 5043 ATGCCACCACGGAGCCTGAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCA 4984 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | ||| ||| |||| ||| || || || | || | || ||||||||||| Sbjct 4983 GCCAAGGTGCGGCCATCCTCCAGTTGCTTGCCAGCAAAGATGAGACGCTGCTGGTCCGGA 4924 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTC 45289 || ||||| || ||||| || || || || | || | || | ||||| |||||||| Sbjct 4923 GGGATGCCCTCCTTATCCTGGATCTTGGCCTTCA-CGTTGTCAATCGTGTCAGAAGACTC 4865 Query 45290 GACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCATC 45341 || ||||| || | || |||||||| ||||| || ||||| || |||||| Sbjct 4864 AACCTCGAGGGTGATGGTCTTGCCGGTGAGAGTCTTCACAAAGATCTGCATC 4813 >seq8128 Length=3827 Score = 96.9 bits (106), Expect = 3e-15 Identities = 160/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || || || | |||||| | ||| ||||| || || || ||||| |||||||| |||||| Sbjct 3293 ATCCCACCCCTGAGCCTGAGCACCAGATGAAGGGTGGACTCCTTCTGGATATTGTAATCG 3234 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | || ||| || | || || || || | || | || |||||||||||| Sbjct 3233 GCAAGTGTCCGGCCATCCTCGAGCTGCTTGCCCGCAAAGATGAGGCGCTGCTGGTCCGGC 3174 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290 || ||||| || || || || || ||| |||| || | |||||||| ||||| Sbjct 3173 GGGATGCCCTCCTTGTCCTGGATCTTTGCCTTGACATTGTCAATTGTGTCGGAGGACTCA 3114 Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCATC 45341 || || || || | || || ||||| ||||| || ||||| || |||||| Sbjct 3113 ACCTCAAGTGTGATGGTCTTCCCGGTCAGAGTCTTCACAAAGATCTGCATC 3063 >seq750497 Length=14261 Score = 95.1 bits (104), Expect = 1e-14 Identities = 161/231 (70%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || || || |||||||| | ||||| || || || || ||||| ||||| || ||||| Sbjct 11061 ATACCACCACGGAGCCTGAGCACTAAGTGGAGGGTGGACTCCTTCTGGATGTTGTAATCC 11120 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | ||| | ||| || | || || || || | |||| ||||||||||| || Sbjct 11121 GCAAGGGTGCGACCATCCTCAAGCTGCTTGCCGGCAAAGATCAGGCGTTGCTGGTCTGGG 11180 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTC 45289 |||||||| || || || || || || |||| || | || | |||||| |||||||| Sbjct 11181 GGAATGCCCTCCTTGTCCTGGATCTTGGCCTTGA-CGTTGTCAATGGTGTCAGAAGACTC 11239 Query 45290 GACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || || || || | || || || || || || || ||||| || ||||| Sbjct 11240 AACCTCCAGGGTGATTGTCTTCCCCGTGAGGGTCTTGACAAATATCTGCAT 11290 Score = 95.1 bits (104), Expect = 1e-14 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || || || |||||||| | ||| | || || || || ||||| ||||| || || || Sbjct 11289 ATACCACCACGGAGCCTGAGCACCAAGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCA 11348 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | ||| | ||| || | || || || || | || | || ||||||||||| Sbjct 11349 GCAAGGGTGCGACCATCCTCGAGCTGCTTGCCAGCAAAGATGAGGCGCTGCTGGTCCGGG 11408 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290 ||||||||||| || || || || ||| |||| || | |||||| || ||||| Sbjct 11409 GGAATGCCTTCCTTGTCCTGGATCTTTGCCTTGACATTGTCAATGGTGTCCGAGGACTCA 11468 Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 ||||| || || | || |||||||| || || || ||||| || ||||| Sbjct 11469 ACTTCCAGGGTGATGGTCTTGCCGGTGAGTGTCTTCACAAAGATCTGCAT 11518 Score = 87.8 bits (96), Expect = 2e-12 Identities = 158/231 (68%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || || || |||||||| | ||| || || || || || ||||| ||||| || || || Sbjct 11517 ATGCCACCCCGGAGCCTGAGCACCAGGTGGAGTGTGGACTCCTTCTGGATGTTGTAGTCA 11576 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | || ||| || | || || || ||| | || | || |||||||||||| Sbjct 11577 GCCAGAGTGCGCCCATCCTCAAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGGTCCGGC 11636 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290 || ||||| || || || || || || |||| || | |||||| || |||||| Sbjct 11637 GGGATGCCCTCCTTGTCCTGGATCTTGGCCTTGACATTGTCGATGGTGTCAGAGGACTCG 11696 Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCATC 45341 || || || || | || |||||||| || || || ||||| || |||||| Sbjct 11697 ACCTCAAGGGTGATGGTCTTGCCGGTGAGGGTCTTCACAAAGATCTGCATC 11747 >seq4499 Length=5690 Score = 86.0 bits (94), Expect = 6e-12 Identities = 158/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 45114 CCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTG 45173 ||||||||||| | | ||| || || || || || ||||| ||||| || || ||| | Sbjct 642 CCTCCGCGGAGGCGGAGCACCAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCGGCG 583 Query 45174 ACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGA 45233 | ||| || || | || || || ||| | || | || |||||||||||||| Sbjct 582 AGGGTGCGGCCGTCCTCGAGCTGCTTACCGGCGAAGATGAGGCGCTGCTGGTCCGGCGGG 523 Query 45234 ATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGAC 45292 ||||| || || || || || || |||| || | || | |||||| || ||||| || Sbjct 522 ATGCCCTCCTTGTCCTGGATCTTGGCCTTGA-CGTTGTCGATGGTGTCCGAGGACTCCAC 464 Query 45293 TTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCATC 45341 || || || | || ||||| || || || || || || || |||||| Sbjct 463 CTCCAGCGTGATGGTCTTGCCCGTCAGGGTCTTCACGAAGATCTGCATC 415 >seq763663 Length=3499 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 45114 CCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTG 45173 || |||||||| | | ||| || || || || |||||||| ||||| || || || Sbjct 2929 CCACCGCGGAGGCGGAGCACCAGGTGGAGAGTGGATTCCTTCTGGATGTTGTAGTCAGCA 2988 Query 45174 ACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGA 45233 | ||| || |||| || || || ||| | || | || ||||||||||||||| Sbjct 2989 AGGGTGCGGCCGTCCTCCAGCTGCTTGCCAGCGAAGATAAGACGCTGCTGGTCCGGCGGA 3048 Query 45234 ATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGAC 45292 ||||| || || || || || || |||| || | || | |||||| || ||| || Sbjct 3049 ATGCCCTCCTTGTCCTGGATCTTGGCCTTGA-CGTTGTCAATGGTGTCTGAGCTCTCAAC 3107 Query 45293 TTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || ||||| | || ||||| || || || || ||||| || ||||| Sbjct 3108 CTCCAGAGTGATAGTCTTGCCAGTGAGGGTCTTCACAAAGATCTGCAT 3155 >seq22228 Length=285 Score = 82.4 bits (90), Expect = 7e-11 Identities = 108/147 (73%), Gaps = 2/147 (1%) Strand=Plus/Plus Query 45195 TGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATT 45254 || || || ||| | |||| |||||||||||||| || ||||| || || || || || Sbjct 9 TGCTTGCCAGCGAAGATCAGACGTTGCTGGTCCGGAGGGATGCCCTCCTTGTCCTGGATC 68 Query 45255 TTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCC 45313 || |||| || | || | |||||| || |||||||| || || || | || ||||| Sbjct 69 TTGGCCTTGA-CGTTGTCAATGGTGTCCGAGGACTCGACCTCCAGGGTGATGGTCTTGCC 127 Query 45314 GGTTAGAGTTTTTACAAAAATTTGCAT 45340 ||| || || || || ||||| ||||| Sbjct 128 GGTCAGTGTCTTGACGAAAATCTGCAT 154 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 441729054263200