Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hordeum_20pubiflorum_20[genbank_20GCA_5F000582825.1_202013-08-30] 1,818,420 sequences; 1,425,274,558 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq78186 163 3e-35 seq763138 131 2e-25 seq49623 116 4e-21 seq779604 91.5 2e-13 >seq78186 Length=6745 Score = 163 bits (180), Expect = 3e-35 Identities = 315/454 (69%), Gaps = 12/454 (3%) Strand=Plus/Minus Query 127231 GTAGTCCCCGACCCGCTTCTCGAAGAAGTTTGTCTTCCCATCGAGGCTGATATTCTCCAT 127290 ||| || ||||| ||||||||||||||||| ||||| || | || ||| |||||| Sbjct 1179 GTACTCGCCGACGCGCTTCTCGAAGAAGTTGGTCTTGCCCTGCAGCGAGATGAGCTCCAT 1120 Query 127291 AAAATCAAATGGGTTCTTTGAGTTCCAAA--TTGTTGGCACCCCAATCTGTTTGAGGAGA 127348 | || || ||||| | | ||| | | |||||| || |||| | |||| || Sbjct 1119 CCAGTCGAACGGGTTGGTGGCGTTGTACAGCTTGTTG-CAGCCCAG-CGCCATGAGCAGG 1062 Query 127349 CGATCCGAGACGTACTCAATGTACTCAGACATCTTCTCAGAGTTCATACCGATGAGGTTA 127408 || || | |||| |||| ||||||| ||| || |||||| || | ||| Sbjct 1061 CGGTCGGCGACGAACTCGATGTACTGGCTCATGAGGTCGCCGTTCATGCCCACGAGCGCG 1002 Query 127409 CATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGTACGATGGCG 127468 || ||||||||||| ||| |||| || |||| |||||||| || ||| ||||| || Sbjct 1001 CAGGGGAGCGCGTCGCAGACGAACTCCCTCTCGATGTCCACGGCCTCCGAGACGATCTCG 942 Query 127469 T-GAATAGTGTCCACCCCAGGTCTATTGCGTA--AAGTCTT-GAAGAGTTCCACAGCAAA 127524 || | | | |||| | | ||| | | ||| | || ||| || || || Sbjct 941 AAGACGCGGGACTCGTCCAGCT-TGCCGCGCAGGATGTCGTAGAGGAGG--CAG-GCGAA 886 Query 127525 CTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCAT 127584 || ||| || |||||||| ||||||||||| || || |||||| || || ||||| Sbjct 885 GTCGCAGTGCAGGCCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAGGTGAGGCCCGGCAT 826 Query 127585 GAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTC 127644 ||| ||||||||||| | |||||| || || || || ||||| ||||||||||| ||||| Sbjct 825 GAGGCCCCGCTTCTTGAGCCAGAAGATGGCGCAGAAGGAGCCCGAGAAGAAGATGCCCTC 766 Query 127645 CACACACGCGAACGCAAATAGACGCTCGGCAAAG 127678 || || ||||| || | | |||||||| ||| Sbjct 765 GACGCAGGCGAAGGCGACGATGCGCTCGGCGAAG 732 >seq763138 Length=14332 Score = 131 bits (144), Expect = 2e-25 Identities = 365/552 (66%), Gaps = 6/552 (1%) Strand=Plus/Minus Query 12518 GCCGTCGCGGACAGCGCGGATGGCACACTCATTGAGGAGGTTCGCCAAGTCGGCACCAGA 12577 |||| |||| | ||| |||| || ||| || | |||||| || | |||||| || Sbjct 4907 GCCGCGGCGGCCGGCGAGGATAGCGGCCTCGTTCATGAGGTTGGCGAGGTCGGCGCCGCT 4848 Query 12578 GAAGCCCGTCGTTTGCTTTGCGATGGCGTGTAGCTTCACATCGTCAGCCAACTTCTTGTC 12637 ||| || | ||| || | || | || | ||| ||| ||| |||||||| Sbjct 4847 GAACCCGGGCGTGCGCATGGCCACCACGCTCAAGGACACGTCGGGGTCCAGCTTCTTGT- 4789 Query 12638 TCGGGC-GTGGACACCCAAAATCTTCTCGCGTCCGCGCACACTGGGTAGGGACACGGTGA 12696 | | || ||| || | | |||| |||||| |||||||| ||| || ||||| | Sbjct 4788 TGGCGCTGTGCACCCTGAGGATCTCCTCGCGGCCGCGCACGTCGGGAAGCCCCACGGACA 4729 Query 12697 TCTTACGATCAAAGCGACCTGGGCGGAGGAGGGCGTCGTCAAGGATATCAATGCGGTTCG 12756 || || || ||||| || |||||||| || ||| |||| ||||| || ||||||| Sbjct 4728 CCTGCCGGTCGAAGCGGCCGGGGCGGAGCAGCGCGGCGTCGAGGATTTCCGGCCGGTTCG 4669 Query 12757 TCGCCGCGATGACAACGATGCCCGTCTCGTTATCGAAGCCATCCATCTCAGTCAAGAGTT 12816 | || ||||| || | || ||| | ||| |||||| |||||||| || | || | Sbjct 4668 TGGCGGCGATCACGATGACGCCGCTGTCGCCGCGGAAGCCGTCCATCTCGGTGAGCAGCT 4609 Query 12817 GATTGATGGTTTGTTCACGTTCATCATT-CGCGGGCATACCACCCGCACTGCGTTGCTTA 12875 | || | || || ||||| || || || | | || | |||| | ||| ||| Sbjct 4608 GGTTCAGAGTCTGCTCACGCTCGTCGTTGCCCCCGCCGATG-CCCGTGCCGCGCTGCCGG 4550 Query 12876 CCGACGGCGTCAATTTCGTCAATGAAAACGATACACGGTTGATTTTCACGGGCAACTTCA 12935 ||||||||||| || ||||| ||||| || | ||||| || || ||| | Sbjct 4549 CCGACGGCGTCGATCTCGTCGATGAACACCAGGCACGGCGCGTTGTCCTTGGCCTTGTTG 4490 Query 12936 AAGATATCTCGCACTCTCTTGGCACCGACACCCACAAACATCTCCACAAAATTGGCGGCG 12995 || | || ||||| | | || || || ||||| |||||||| | || | | || Sbjct 4489 AACAGGTCCCGCACCCGCGACGCGCCCACGCCCACGAACATCTCGATGAACTCCGACCCG 4430 Query 12996 GAACATTG-GATGAAGGGGACGTTGGATTCACCCGCGATGGCTCGGGCGAGGAGGGTCTT 13054 || || | || |||||| ||| || || |||||||| || ||| || || ||||| Sbjct 4429 GA-CAGCGAGAAGAAGGGCACGCCGGCCTCGCCCGCGATCGCCTTGGCCAGCAGCGTCTT 4371 Query 13055 CCCCGTCCCTGG 13066 ||||||||| || Sbjct 4370 CCCCGTCCCCGG 4359 >seq49623 Length=10526 Score = 116 bits (128), Expect = 4e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 117136 TGTGGCCTTGGTGTACCAGCGTTGAAGAGGGTTGGTGTCGCGTGGATGAACATACCTTGG 117195 || |||||||| || ||||||||||| |||||||||| || || | ||| | ||| Sbjct 3730 TGAGGCCTTGGGGTGCCAGCGTTGAAAAGGGTTGGTGAAGCATGAGTAAACCAGCGCTGG 3671 Query 117196 GACATCTTATCGTAGGTCTCCAAGACAGAGGGAATGTCTTCCCCGTGAATACCGATTGAG 117255 ||||| || |||||| | | ||||| ||||| ||| ||| || || | ||| Sbjct 3670 GACATGAGATGGTAGGTTCTGATGGCAGAGTCGATGTCATCCTTGTGTATCCCTACTGAA 3611 Query 117256 ACCCGCATAAACATGTATTGGGGTGTTTCCATCAGGATACCATCGAGCCTCTGGAGGTAA 117315 |||| ||| ||||||| || || |||||| | | ||| | ||| || |||||||| Sbjct 3610 ACCCTCATTAACATGTGCTGCGGCCTTTCCACGACAACCCCACCAAGCTTCAGGAGGTAA 3551 Query 117316 CTCTTCTCCAAGGTCTTGAGACCAAAATAGCCAAAGTCATAGTCCCT 117362 | |||||| ||||||| ||||| ||| || | ||| ||||||| Sbjct 3550 GACCTCTCCAGAGTCTTGAAGCCAAAGTAGTCATAATCAAAGTCCCT 3504 >seq779604 Length=6485 Score = 91.5 bits (100), Expect = 2e-13 Identities = 277/422 (66%), Gaps = 12/422 (3%) Strand=Plus/Plus Query 12690 ACGGTGATCTTACGATCAAAGCGACCTGGGCGGAGGAGGGCGTCGTCAAGGATATCAATG 12749 ||||| | || ||||| || | ||||| || || || || |||||| | ||| Sbjct 3427 ACGGTCACCTGCCGATCGAACCTCCCTGGCCGCAGAAGCGCCGAGTCAAGAACATCCGGC 3486 Query 12750 CGGTTCGTCGCCGCGATGACAACGATGCCC--GTCTCGTTATCGAAGCCATCCATCTCAG 12807 | ||| ||||| |||| || | || || || || | |||||| |||||||| | Sbjct 3487 CTGTTGGTCGCAGCGAGCACGATGACACCGCTGTTTCCGGA--GAAGCCGTCCATCTCCG 3544 Query 12808 TCAAGAGTTGATTGATGGTTTGTTCACGTTCATCATTCGCGGGCATACC---ACCCGCAC 12864 | | || || |||||||| || || | ||||| ||| | | ||| ||| |||| Sbjct 3545 TGAGCAGCTGGTTGATGGTCTGCTCCCTCTCATCGTTCCC---CCCACCCATACCGGCAC 3601 Query 12865 TGCGTTGCTTACCGACGGCGTCAATTTCGTCAATGAAAACGATACACGGTTGATTTTCAC 12924 || ||| | |||||||||||||| || || ||||| ||||| || || || | Sbjct 3602 CACGCTGCCTCCCGACGGCGTCAATCTCATCGATGAAGACGATGCAGGGCGCCTTGGCCT 3661 Query 12925 GGGCAACTTCAAAGATATCTCGCACTCTCTTGGCACCGACACCCACAAACATCTCCACAA 12984 ||| || |||| || | ||| || || || || || || || | ||| || | Sbjct 3662 TGGCCTTCTCGAAGAGGTCCCTCACCCTGGACGCGCCCACGCCGACGAAGAGCTCGACGA 3721 Query 12985 AATTGGCGGCGGAACATTGGATGAAGGGGACGTTGGATTCACCCGCGATGGCTCGGGCGA 13044 | | | |||| || || |||||| || || || || |||| ||| ||||| | Sbjct 3722 ACTCAGACGCGGCGCAGGAGAAGAAGGGCACCCCGGCCTCCCCGGCGACGGCACGGGCCA 3781 Query 13045 GGAGGGTCTTCCCCGTCCCTGGTTTCCCCGCGAGAAGGGCACCACGT-GGGATCCTGGCA 13103 | || |||||||| ||||| || || |||| | |||| | | | |||||| |||| Sbjct 3782 GCAGTGTCTTCCCGGTCCCGGGCGGGCCGACGAGCA-GGCAGCCCTTGGGGATCTTGGCC 3840 Query 13104 CC 13105 || Sbjct 3841 CC 3842 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 599562027967200